Dragon Age 2 - I was surprised that it wasn't exactly like DA:O but when I gave it a chance, I loved it. The characters were good, the storytelling was mature, and the combat was a massive improvement.

Final Fantasy XIII - Was it FF VI? No, but it was pretty good. Had it been named something other than 'Final Fantasy', it would have only sold to people who actually like JRPGs and the buzz would have been much more positive.

Soul Calibur IV - I got a lot of enjoyment out of it before I read online that I was supposed to hate it.

Bloodrayne 1 & 2 - They were just a lot of fun and I loved her sarcastic commentary. I'm still sad that we never got Bloodrayne 3.

Pitfall the lost expedition

I suppose Endless Ocean 2 wasn't liked by everyone, but it was my GOTG last gen.

Also Pokemon Mystery Dungeon and Rangers.

See my sig. I'm such a hipster, fuck yeah!

Super Paper Mario!

Spirit Tracks,

shooters

Final Fantasy XIII

Resident Evil 3 (Not exactly hated, but extremely under-appreciated compared to other entries in the series.)

Sonic Adventure

Sonic Adventure 2 seems to get more hate nowadays!