Probably the biggest ones were
Metroid Other M -Yes I like this game. I love the speed, I love the over the top finishing sequences, I love the throwbacks to Super Metroid, I just loved this game.
Final Fantasy Crystal Bearers - I loved that fact that for the first time since Final Fantasy X, I felt I was playing an actual FF game. It was open World with no hand holding (and I got lost a few times), the story expanded the crystal chronicles lore (as the exposure to the crystals over time began to make the citizens evolve and gain powers, and therefore feared by the government), it was also overall very fun to me.It had problems, and I mean HUGE, HUGE problems, but the groundwork was laid for an amazing sequel. (Obviously one I will never see, which is sad.)
If we could take the same cast, give everyone physical weapons, use the touchpad for stacking magic and a seperate scrollable screen to move objects with telepathy via the gamepad, and make the game 4 player drop in drop out online like Echoes Of Time and update the graphics for the Wii U it would be one of the greatest games ever! (IMO)