1 - Ocarina of Time 3D...
2 - Twilight Princess...
3 - Link's Awakening DX...
4 - Majora's Mask...
5 - Phantom Hourglass (I know it's not the best Zelda ever, but I will never get all the hate this game gets)...

mmmh hard

TLOF SS
TLOF OOT (3D)
TLOF TP
TLOZ
TLOZ ALTTP

in no order

1. Ocarina of Time
2. Skyward Sword
3. Twilight Princess
4. A Link to the Past
5. The rest, didn't like any of the others I played

I've only got to play three of them:
Ocarina of Time
Minish Cap
Majora's Mask.

I thought about not posting because it spoils some of my entries in my top 50 list in that thread... But then I thought that my #1 spot isn't really a surprise anyway. So here, my top everything Zelda (descending order). I've played and completed them all except Four Swords Adventures, so that one's not included. I imagine it would rank second to last though;

1. Ocarina of Time
2. Link's Awakening
3. Twilight Princess
4. Majora's Mask
5. A Link to the Past
6. Skyward Sword
7. The Legend of Zelda NES
8. The Wind Waker
9. Spirit Tracks
10. Adventure of Link
11. Oracle of Ages
12. Oracle of Seasons
13. Minish Cap
14. Phantom Hourglass
15. Four Swords

Of only Four Swords I would say it's a bad(ish) game, hence I'd expect FSA to only rank just above that. I find the Capcom games and Phantom Hourglass to be mediocre for Zelda standards, but everything above it is good and better. The top 5 are needless to say timeless classics by any standard. Wind Waker actually pushed up a spot to overtake Spirit Tracks because I thought the remake made the game a lot better. #4, 5 and 6 are about equal to me and they swap places depending on my mood .

As it looks the new A Link Between Worlds could end up around Skyward Sword for me, but we'll see.

Four Swords Adventures on GameCube is playable in singleplayer as well as multiplayer. Four Swords on GBA is only multiplayer, but they released a special version for free as DSi-ware for the 25th anniversary in 2011 but I'm not sure it's still available. Both games are made to be played multiplayer though and both are different games with their own stories and their own places in the timeline.

1. Twilight Princess (the most complete Zelda game)
2. Majora's Mask (that game was bloody great)
3. Wind Waker (had so much fun sailing over the Great Sea)
4. Oracle of Seasons
5. Ocarina of Time (3D)

1. Twilight Princess
2. Majora's Mask
3. A Link to the Past
4. The Legend of Zelda
5. The Legend of Zelda II

Not sure why so many people hate Zelda II, it was a great action sidescroller. Difficult but fair.

In no particular order..

*A Link to the Past
*Wind Waker
*Minish Cap
*Ocarina of Time
*Skyward Sword

1. Majora's Mask
2. Ocarina of Time
3. Skyward Sword
4. A Link to the Past
5. Twilight Princess