Not sure how multiplayer games or things like Roguelikes play into this.
NES Gen- Mega Man 2
SNES- Kirby Superstar
N64 Gen- Probably Mario 64. Maybe Pokemon Red/Blue?
Gamecube Gen- Nothing comes to mind actually. I think this is the gen where pick up and play games were really not favored and there are not a lot of games that lent themselves to lots of replays. Probably Resident Evil 4 since I at least played that enough to unlock all of the super weapons and such. Although most of those replays were probably on the Wii version. Played through KH2 a few times although not all on PS2.
Wii Gen- Super Mario Galaxy 2 or maybe Mass Effect 2.
Wii U Gen- Yeah I'm calling it Wii U gen cause that's what I played most. Anyway Kid Icarus Uprising.
Switch Gen- Probably slay the spire if you're counting roguelikes. If not, maybe Spiderman on PS4? I played that like twice.