1.Final Fantasy VI
2.Chrono Trigger
3.Super Mario RPG
Illusion of Gaia and Zelda would be there, but I'm not sure they should count...
I've also played FFIV, Earthbound, Secret of Mana and Secret of Evermore, but don't think any of those would qualify as my favorites.
I make game analyses on youtube:
FFVI: https://www.youtube.com/watch?v=mSO6n8kNCwk
Shadow of the Colossus: https://youtu.be/9kDBFGw6SXQ
Silent Hill 2: https://youtu.be/BwISCik3Njc
BotW: https://youtu.be/4auqRSAWYKU