^
1) I hope that you understand that procedurally generated content in vidoegames is a "toy model" i.e. one that can provide insights into how a real model can be developed, but not an explanation of actual phenomena. In particualr the complexity of real world physics means that both the evolving subject and the selecting environment offer orders of magnitude more complex and subtle problems and solutions.
We can't numerically predict the weather on micro scales and useful times. I don't think anyone will postulate that it means that our physics of gas is wrong, or that our general atmosphere knowledge is completely wrong. It merely means that our numerical simulations are very poor because the real phenomenon is very complex.
2)
"Natural selection is insufficient to explain how complex functioning systems got there. Natural selection doesn't add any new features, it merely cuts them out. What is needed is to understand the mechanics of how features got there. And there is some work done, but a LOT left to do. Until this is done, there will still be the gap, and what seems normal to say someone engineered it."
Selection is of course only half of the evolution through natural selection model, the other one being the hypothesis of natural variation.
And of course there's a lot of debate about the real mechanisms by which these variations occurs, the amount in whcih they can accumulate, the "size" of evolutionary jumps, the "virtual machine" effects when changes have deep behavioural influxes (see Popper).
But still, that's all an insider debate, that does not refute the general scaffolding of "random variety in genotipe/fenotipe pruned by natural environment".
Last but not least "normal" brings no epistemologic value here. Normal for whom? It might have been normal for a small tribe to think that lightning was caused by angry gods, or that the faces we can see in tree bark and shaped rocks were frozen spirits of dead people. For me, it's normal to understand how lightning work in ionization terms, and how we tend to recognize a lot of patterns as faces because a lot of our social skills needed such a bias in visual analysis. Thus "normal" in this context means "according to the amount of knowledge", and you're just saying that people that know little about evolution will resort to ID.
3) There are no fossils of eyes, thus we don't have the lineage of changes that led to our current structures.
But we have
a) fossils of bones showing the phylogenesis of skeletal apparati. The fingers inside the cetaceans' "fins" for example. Or the evolution of the foot in proto-horses.
b) parallel evolution of similar structures in indipendent manner. The octopus' eye evolved indipendently from ours and has many of the same structural features, but a retina that has an actually better design because the sensors are not "upside down".
c) An animal that is genetically closer to the octopus than to us, the nautilus, still has an "open chamber" eye like one could think would be developed at some point during that sequence of smaller steps. Animals that are genetically closer to common ancestors of us and octopi exhibit even more primitive eyes. In short, genetic similarity used as a measure to renconstruct a "tree of species" is in accord with the evolution fo the eye structures along the "branches".
This is empirical data, and science. No, it's not replicating that evolution of an eye in a lab or having a neat sequence of photos of the intermediate steps. Just like we don't replicate the conditions of the core of the sun in a lab and we don't get exact readings of its working in all detail. We take our empirical data, see if our models explain the data in a simple manner, see if the models are predictive of something we can test, proceed with testing and research new empirical data.
The day science will be restricted to just "showing" an actual phenomena will be the day we regress to 19th century science, given that nowadays we are working on scales of time and energy and complexity that only allow indirect testing.
Once upon a time you had god creating the world in six days because we had not the faintest idea of how the universe had evolved, now the line has been moved to where the new explanatory complexity lies, i.e. the first microseconds of the big bang or the detailed mechanism of phylogenesis. Stil, saying "someone intelligent did it because right here and now I can't understand how it became to happen" is the same cop-out. Meanwhile, as scientific knowledge advances that threshold of ignorance turned "hypothesis" is moved further and further... so much that there's no reason to believe that it has any reason to be in the first place.
PS: Pascal's wager is silly in more ways that one.
Ethically, Pascal's god doesn't seem to care if you behave somehow because you love your neighbour or because you are looking for your own reward. A formal god.
Logically, outweighting the realistic choice (don't believe in god, this life is all you get) with an outlandish one (an entity will reward you if you believe in its existance) is devoid of any value because the oultandish choice has no more probability to be true than infinite other outlandish ones which predicate a different behaviour. Not just as someone else said "what if in the end the islamists were right", but even more outlandish ones. What if afterlife is governed by an evil demon that rewards who was atheist in life and gives eternal punsihment to the believers and all their beloved?
The moment you start admitting arbitrary, hypothetical rules is the moment the bet loses any logical meaning.