Obviously not all of the franchises will but I don't know if you were getting at that so I think this post is pretty fair in it's reasonableness. I think I posted this before but I'll say it again, if we're talking about libraries the Switch is the closest to the Nintendo 64 than any other Nintendo console. Most of their big franchises are innovative both for the hardware capabilities(the ability to play on the go) and their innovation within their franchise. Obviously the innovation isn't to the same degree as Ocarina of Time or Mario 64 but it's interesting to see that this is pretty much the first Nintendo console to be both innovative from a technical and game perspective since the 64.
Nintendo franchises have for the most part at least, always done much better when they were innovative, it's one of the reasons why a lot of their games remain pretty stagnant in sales.
Anyways my prediction would be something like this(assuming these games are made) :
Best selling Advance Wars : Yes
Best selling Animal Crossing : This could go both ways, but I think i'm leaning towards yes. If we're using lifetime sales, then I think the game will beat every Animal Crossing game(and probably do it in about 2 years or so). I thought Dragon Quest 11 was going to do worse than it actually did, because I did not expect the fanbase to still be on consoles, since statistically speaking Japanese players have mostly moved to handheld or mobile. But Dragon Quest 11 has proved that a fanbase can still stay alive after years of no console version, and I think with all the NA fans asking for an Animal Crossing on Wii U, the worldwide sales will beat out every Animal Crossing.
Best selling Donkey Kong: It won't outsell Donkey Kong Country or Returns
Best selling Golden Sun: Really depends on if the developers of the game want to put in the effort to make this into the next Fire Emblem Awakening. The game series was already the most popular of the big 3 Nintendo handheld RPGs, but it's become pretty obscure now. Overall I'd say no, unless a lot of work is put into advertising.
Best selling F-Zero: No
Best selling Kid Icarus: If it's made, probably.
Best selling Kirby: It won't oustell Dreamland or Super Star Ultra, and I don't think it will outsell Epic Yarn.
Best selling 2d Mario: No. This game series was like Tetris to Gameboy. Good for novelty but eventually everyone got tired of the 2d experience.
Best selling 3d Mario: Honestly I don't see how this couldn't be the case. It will sell at least 11 million physical and will probably reach 13 million including digital. But I could see this doing 15 million lifetime.
Best selling Mario Kart: No.
Best selling Pikmin: Yes
Best selling Pokemon: The best selling since Diamond.
Best selling StarFox: No
Best selling Super Smash Brothers.: To be honest, yes. SSB4 proved their was a market for a handheld Smash Bros, and even though some of those sales might be previous SB owners who didn't get a Wii U, I think the market share will increase with the Switch, which functions both ways. Even if it only captures a small portion of the handheld Smash community, the attach ratio for Smash games has gone up and the Switch can do significantly worse in sales compared to the Wii and still get close to the numbers the Wii version of Smash got. Just no way I don't see a Smash 5 being the best selling Smash.
Best selling 3D The Legend of Zelda: Is this even a question? By far yes.
Best selling 2D The Legend of Zelda: If it happens, no.
Best selling WarioWare: No