I bought Viewtiful Joe, Resident Evil 4, Resident Evil REMake, NBA Street v2 (?), LOTR: Two Towers, and Soul Calibur 2 on the GameCube. I guess Metal Gear Solid: The Twin Snakes as well counts as a game technically published by Konami too.
On the Wii I bought basically nothing from third parties but GoldenEye and Monster Hunter Tri and Monster Hunter really wasn't my thing (I can see the appeal, but it's just not for me) so I traded that in.
On N64 I think I had pretty much zero third party games, lol unless Star Wars: Rogue Squadron counts.
The GameCube actually wasn't as bad as people say third party wise. It didn't have GTA or Final Fantasy or Devil May Cry or MGS2/3, but it did have Resident Evil, Tales of Symphonia, Baten Kaitos, Viewtiful Joe, Killer 7, Metal Gear Solid: The Twin Snakes, Star Wars Rogue Squadron II and III as exclusive/premiere titles, which for my tastes wasn't a bad trade off (wasn't interested in GTA). Final Fantasy: Crystal Chronicles was OK too I guess, but no FFXII.
If I was Nintendo I probably would've squeezed Squaresoft a little harder on the Game Boy license and insisted on a more mainstream FF game or (gulp) even a FF7 Remake.
GCN had most multi-plats otherwise (Beyond Good & Evil, NBA Street, Soul Calibur 2, Timesplitters 2, etc.).