Every time I've ever seen Yoshi's Story for the N64 mentioned, it's always been presented in a very negative light. For instance, take this excerpt from the SMW 2: Yoshi's Island page in IGN's "Top 100":
Am I the only person that really enjoyed Yoshi's Story? I rented it, loved it, and later bought it. I may not enjoy it as much now, but it's still fun, and at the time it was great.
Btw, the white and black Yoshis were the best.