Soundwave on 03 December 2014
By 3D I assume you mean open-world 3D games were the camera tracks behind the player (like Mario 64) in a 3D environment.
I think that case
Pikmin 3, Bayonetta 2, Zelda U, Zelda: Wind Waker, LEGO City, Xenoblade, apply.
I suspect there is an Amiibo Universe type of game that will fit this bill too.
But under your criteria, Nintendo themselves only made handful of 3D games for the N64 -- Mario 64, Zelda: OoT, Zelda: MM and uh ... well you can't count 1080, Wave Race, or Mario Kart because by your definition those aren't 3D adventure games. Yoshi's Story is 2D.
