Region: North America
SKU: Nintendo 3DS XL Limited Edition Pikachu

[PHYSICAL]
Pokémon: X Version
Pokémon: Alpha Sapphire Version

[DIGITAL]
Super Smash Bros. for 3DS
Mario Kart 7
A Link Between Worlds
Super Street Fighter IV: 3D Edition
The Legend of Zelda: Ocarina of Time 3D
The Legend of Zelda: Majora's Mask 3D
Metal Gear Solid: Snake Eater 3D
Resident Evil: Revelations
Shin Megami Tensei IV
Super Mario 3D Land
Donkey Kong Country Returns 3D
Star Fox 64 3D
Rayman 3D
One Piece Unlimited World Red
Sonic Generations
Retro City Rampage
Dillon's Rolling Western
SteamWorld Dig: A Fistful of Dirt
Sakura Samurai: Art of the Sword
Mighty Switch Force
Nano Assault EX
Cave Story
Gunman Clive
Aerate Speed
Edge
Moon Chronicles
Thorium Wars: Attack of the Skyfighter
Azure Striker Gunvolt
Mighty Gunvolt
Flipnote Studio
Pokémon Shuffle
Ironfall: Invasion
Rusty's Real Deal Baseball
Mega Man 2
Mega Man 4
The Legend of Zelda (NES)
The Legend of Zelda: Link's Awakening DX
Zelda: Four Swords Anniversary Edition
3D Sonic the Hedgehog
3D Galaxy Force II
3D Classics: Kirby's Adventure
Meteoroid II - Return of Samus
Shantae
Pokédex 3D Pro

Region: United States

SKU: Pokémon X & Y Limited Edition Red

Software:

[Physical]

Bravely Default

Fire Emblem: Awakening

Kid Icarus: Uprising

The Legend of Zelda: A Link Between Worlds

The Legend of Zelda: Majora's Mask 3D

The Legend of Zelda: Ocarina of Time 3D

Mario Kart 7

Pokémon Y

Super Mario 3D Land

Super Smash Bros. for Nintendo 3DS

Super Street Fighter IV: 3D Edition

[Digital]

3D Classics: Excitebike

3D Classics: Kid Icarus

3D Classics: Kirby's Adventure

3D Classics: Xevious

Dillon's Rolling Western

Mighty Switch Force!

Phoenix Wright: Ace Attorney Trilogy

Pokémon Art Academy

Pushmo

Shovel Knight

Region: America
SKU:
Nintendo 3DS Black Version, 'New' Nintendo 3DS XL Black Version, Nintendo 3DS XL Retro Nes Edition, Nintendo 2DS Red Version.

Software:
[Physical]
The Legend of Zelda: Ocarina of Time 3D
The Legend of Zelda: Majora's Mask 3D
The Legend of Zelda: A Link Between World
The Legend of Zelda: The Triforce Heroes
New Super Mario Bros. 2
Super Mario 3D Land
Luigi's Mansion: Dark Moon
Mario Golf World Tour
Mario Tennis Open
Sonic Generations
Sonic Lost World
Yoshi's Island
Kirby: Triple Deluxe
Super Smash Bros. 3DS
Kid Icarus: Uprising
Bit Trip
Pokemon Y
Pokemon X
Pokemon Omega Ruby
Pokemon Alpha Sapphire
Mario & Luigi: Dream Team
Donkey Kong Country Returns 3DS

[VC]
Mega Man 1 (Nes)
Mega Man 2 (Nes)
Mega Man 3 (Nes)
Mighty Final Fight (Nes)
Street Fighter 2010 (Nes)
Ghosts 'n Goblins (Nes)
Gargoyle's Quest 2: The Demon Darkness (Nes)
Metroid (Nes)
Super Mario Bros. (Nes)
Super Mario Bros. 3 (Nes)
Punch Out!! Featuring Mr. Dream (Nes)
The Legend of Zelda (Nes)
Zelda 2: The Adventure of Link (Nes)
Double Dragon 2: The Revenge (Nes)
Ninja Gaiden (Nes)
Life Force (Nes)
Castlevania (Nes)
Super Contra (Nes)
Blaster Master (Nes)
S.C.A.T. (Nes)
Shadow of Ninja (Nes)
Metroid 2: Return of Samus (Game boy)
Mega Man 4 (Game boy)
Super Mario Land (Game boy)
The Legend of Zelda: Oracle of Ages (Gameboy Color)
The Legend of Zelda: Oracle of Seasons (Gameboy Color)
Mega Man Xtreme (Gameboy Color)
Shinobi (Game Gear)
Tails Adventure (Game Gear)

[Indie]
Shovel Knight
Azure Striker Gunvolt

[3D Games]
3D Sonic The Hedgehog
3D Shinobi 3 Return of the Ninja Master
3D Kid Icarus
3D Kirby's Adventure

Hardware:

3DS Aqua Blue [PAL, Australian]
3DS Midnight Purple [NTSC-U, American]

Software (Retail):

PAL (Includes Australian, UK and European releases):

Ace Combat: Assault Horizon Legacy Plus
Bravely Default
Fire Emblem: Awakening
Heroes of Ruin
James Noir's Hollywood Crimes 3D
Kid Icarus: Uprising
The Legend of Zelda: A Link Between Worlds
The Legend of Zelda: Ocarina of Time 3D
Luigi's Mansion 2
Mario Kart 7
Mario Tennis Open
Paper Mario: Sticker Star
Pilotwings Resort
Pokémon Y
Professor Layton and the Miracle Mask
Resident Evil: Revelations
Star Fox 64 3D
Steel Diver
Super Monkey Ball 3D

NTSC-U (North American):

Shin Megami Tensei IV

Region: North America

SKU: Nintendo 3DS - Flame Red

Software (Physical):

Super Mario 3D Land

Sonic Generations

Mario Kart 7

Paper Mario: Sticker Star

New Super Mario Bros. 2

Zelda: A Link Between Worlds

Super Smash Bros. for Nintendo 3DS

Software (Digital):

Kirby's Dream Land

Zelda: Link's Awakening DX

Pokemon Shuffle

(Unsure if it counts) Flipnote Studio 3D

Region: US
SKU: Black "New" 3DS XL(with 64 GB card)

Physical:
Super Street Fighter 4 3D
Super Smash Bros
Mario Kart 7
Tetris Axis
Kid Icarus Uprising
Legend of Zelda: A Link Between Worlds
Pokemon Omega Ruby
Super Mario 3D land
New Super Mario Bros 2
Mario and Luigi: Dream Team
Professor Layton VS Phoenix Wright: Ace attorney(best game ever. Story is heartbreaking)
Tomodachi Life(stopped playing after an hour, very disappointing :P)
Xenoblade Chronicles: 3D

Digital:
Pokemon X
Animal Crossing New Leaf(free from club nintendo)
Donkey Kong: Country Returns 3D(free from club nintendo)
Bit Trip Saga(

Region:

• North America

SKU:

• Pikachu 3DS XL (Currently defunct)
• New Nintendo 3DS XL Black

Physical:

• Bravely Default
• Dead or Alive: Dimensions
• Donkey Kong Country Returns 3D
• Etrian Mystery Dungeon
• Etrian Odyssey Untold
• Etrian Odyssey IV
• Fire Emblem Awakening
• Hakuouki - Memories of the Shinsengumi 
• Harvest Moon 3D: A New Beginning
• Heroes of Ruin
• Kid Icarus: Uprising
• (Kirby Triple Deluxe)*
• Kingdom Hearts 3D: Dream Drop Distance
• Luigi's Mansion: Dark Moon
• Mario & Luigi: Dream Team
• Mario Kart 7
• Monster Hunter 3 Ultimate
• Monster Hunter 4 Ultimate
• (New Super Mario Bros. 2)*
• (Paper Mario: Sticker Star)*
• Puzzle & Dragons Z + Puzzle Dragons Super Mario Bros. Edition
• Pokemon Omega Ruby
• Pokemon X
• Project X Zone
• Resident Evil: Revelations
• Rune Factory 4
• Shin Megami Tensei: Devil Survivor Overclocked
• Shin Megami Tensei IV
• Shinobi
• (Super Mario 3D Land)*
• Super Smash Bros. for 3DS
• Super Street Fighter IV 3D Edition
• Tales of the Abyss
• Tetris: Axis
• Theatrhythm Final Fantasy
• Theatrhythm Final Fantasy Curtain Call
• The Legend of Zelda: A Link Between Worlds
• The Legend of Zelda: Ocarina of Time 3D

Digital:

• Ace Attorney Dual Destinies
• Animal Crossing
• Azure Striker Gunvolt
• Crimson Shroud
• Dillon's Rolling Western
• Fluidity spin cycle
  
• Gunman Clive
• Harmo Knight
• Lego City Undercover: The Chase Begins
• Nano Assault EX
• Pokemon Shuffle
• Pushmo
• Senran Kagura Burst
• Shovel Knight
• Steam World Dig - A Fistful of Dirt -

Virtual Console:

• Dr. Robotnik's Mean Bean Machine
• Ghosts'N Goblins
• Kid Icarus (3D Classics)
• Kirby's Adventure (3D Classics)
• Kirby's Dream Land
  
• Mega Man 2
• Mega Man 3
• Metroid
• Pac-man
• Sonic (3D Classics)
• Sonic 2 (3D Classics)
• Super C
• Super Mario Bros.
• Super Mario Bros. 2
• Super Mario Bros. 3
• The Legend of Zelda
• The Legend of Zelda: Link's Awakening DX
• The Legend of Zelda: Oracle of Ages
• The Legend of Zelda: Oracle of Seasons

Digital DS:

• Anonymous Notes 1 - From The Abyss -
• Bejeweled Twist
• Cave Story 
• Magical Whip
• Mario vs. Donkey Kong: Minis March Again!
• Starship Defense
• Tetris Party Live
  
• Zelda: Four Swords Anniversary Edition

Did I do it right?

(Tiny edit: * means it is currently lent out, and edited for readability) 

pictures: 

Bump, five days left to complete the survey.

Also, I forgot to note it, but you don't need to put in the VC releases you've bought. I'll consider it if there are future surveys after my current set.

Region-UK
SKU- Black launch 3DS, bundled with Rayman and Ridge Racer.

Physical
Mario 3D Land
NSMB2
Ocarina of time
A link between worlds
Paper Mario sticker star
Dead or Alive Dimensions
Star Fox
Prof Layton Mask of miracle
Fifa 12
Mario Kart 7
Lego Batman 2
Driver renegade
Epic Mickey 2
Mario Tennis

Monkey Ball 3D

Digital
Zen Piball
Lets golf 3D
Gunman Clive
Bird Mania

VC
The 20 free ambassador games after the price cut.

Region: North America
Consoles: Nintendo 3DS (Black) , New Nintendo 3DS (White, AC HHD Bundle)

Physical:
Fire Emblem Awakening
Super Smash Bros 4 3DS
Rune Factory 4
Fantasy Life
Bravely Default
Conception 2 (SE)
Pokemon Y
Pokemon Alpha Sapphire
Ocarina of Time 3D
A Link Between Worlds
Theatrhythm Final Fantasy
Theatrhythm Final Fantasy Curtain Call (SE)
Mario Kart 7
Shin Megami Tensei IV (SE)
Hatsune Miku Project Mirai DX (SE)
Tales of the Abyss
Kingdom Hearts 3D

Digital:
Animal Crossing New Leaf
Animal Crossing Happy Home Designer (bundle)
Etrian Odyssey Untold: TMG
Cube Tactics
Ollie Ollie (ty Smeags)
Pokemon Shuffle :/
Stretchmo

VC + DSi
Four Swords Anniversary
Pop Island
Bomberman Blitz
The Legend of Zelda (NES)
Link’s Awakening DX
Oracle of Ages
Oracle of Seasons