http://geimin.net/da/db/2013_ne_fa/index.php

I would post the whole list but this would break the website.  Interesting read though.  

▼ market share of each model Model Unit sales meter % Number 3DS 21,568,841 53.4 87 PS3 9,882,309 24.5 120 Vita 2,722,633 6.7 52 WiiU 2,524,115 6.3 18 PSP 2,437,436 6.0 88 Wii 849,202 2.1 Nine XB360 235,996 0.6 25 DS 133,026 0.3 One PS2 11,531 0.0 One Total 40,365,089 99.9 401

▼ market share of each manufacturer (top 10 companies) Manufacture name Unit sales meter % Number Nintendo 8,946,484 22.2 28 NAMCO BANDAI Games 6,215,061 15.4 65 Capcom 4,621,938 11.5 19 Pokemon 4,165,345 10.3 Three Square Enix 3,497,525 8.7 24 KONAMI 1,790,035 4.4 17 LEVEL-5 1,332,153 3.3 Eleven Tecmo Koei Games 1,321,188 3.3 26 Gung Ho Online Entertainment 1,049,744 2.6 Two SCE 879,084 2.2 Eleven Other 6,546,532 15.8 195 Total 40,365,089 99.7 401

Also, for anyone interested, this is 2012's list:

http://geimin.net/da/db/2012_ne_mc/index.php

▼ market share of each model Model Unit sales meter % Number 3DS 16,737,113 33.9 150 PS3 11,627,502 23.5 258 PSP 7,653,834 15.5 273 Wii 5,071,405 10.3 75 DS 4,882,276 9.9 106 Vita 1,918,940 3.9 61 WiiU 848,202 1.7 14 XB360 656,096 1.3 58 PS2 48,780 0.1 Five Total 49,444,148 100.1 Thousand

▼ market share of each manufacturer (top 10 companies) Manufacture name Unit sales meter % Number Nintendo 11,902,944 24.1 73 NAMCO BANDAI Games 8,463,689 17.1 150 Capcom 4,307,371 8.7 71 Pokemon 3,967,329 8.0 13 Square Enix 3,836,161 7.8 Sixty KONAMI 2,747,183 5.6 62 SEGA 2,197,666 4.4 45 LEVEL-5 1,609,880 3.3 24 Tecmo Koei Games 1,206,122 2.4 48 SCE 1,134,201 2.3 41 Other 8,071,602 15.7 413 Total 49,444,148 99.4 Thousand

Bruno has kindly made the top 100 a lot more readable so going to post that here too:

http://www.neogaf.com/forum/showpost.php?p=98849733&postcount=246

01. [3DS] Pokémon X / Y # <RPG> (Pokémon Co.) {2013.10.12} (¥4.800) {2013.10.12} - 3.976.829
02. [3DS] Monster Hunter 4 # <ACT> (Capcom) {2013.09.14} (¥5.990) - 3.293.312
03. [3DS] Animal Crossing: New Leaf # <ETC> (Nintendo) {2012.11.08} (¥4.800) - 1.730.182 / 4.017.159
04. [3DS] Friend Collection: New Life # <ETC> (Nintendo) {2013.04.18} (¥4.800) - 1.580.067
05. [3DS] Dragon Quest VII: Fighters of Eden <RPG> (Square Enix) {2013.02.07} (¥6.090) - 1.227.377 
06. [3DS] PazuDora Z: Puzzle & Dragons Z <RPG> (GungHo Online Entertainment) {2013.12.12} (¥4.400) - 1.005.697
07. [3DS] Luigi's Mansion: Dark Moon <ACT> (Nintendo) {2013.03.20} (¥4.800) - 982.737
08. [PS3] Grand Theft Auto V <ACT> (Take-Two Interactive Japan) {2013.10.10} (¥7.770) - 605.882
09. [WIU] New Super Mario Bros. U # <ACT> (Nintendo) {2012.12.08} (¥5.985) - 584.479 / 965.794
10. [WIU] Wii Party U # <ETC> (Nintendo) {2013.10.31} (¥4.935) - 518.766
11. [PS3] Metal Gear Rising: Revengeance # <ACT> (Konami) {2013.02.21} (¥6.980) - 470.597
12. [PS3] JoJo's Bizarre Adventure: All-Star Battle # <FTG> (Bandai Namco Games) {2013.08.29} (¥7.980) - 468.652
13. [3DS] New Super Mario Bros. 2 # <ACT> (Nintendo) {2012.07.28} (¥4.800) - 445.241 / 2.225.734
14. [3DS] Disney Magic Castle: My Happy Life # <ETC> (Bandai Namco Games) {2013.08.01} (¥5.480) - 427.070 
15. [WIU] Super Mario 3D World <ACT> (Nintendo) {2013.11.21} (¥5.985) - 410.041
16. [PS3] One Piece: Pirate Warriors 2 # <ACT> (Bandai Namco Games) {2013.03.20} (¥8.190) - 406.324
17. [PS3] Lightning Returns: Final Fantasy XIII <RPG> (Square Enix) {2013.11.21} (¥7.770) - 404.147
18. [3DS] Mario & Luigi: Dream Team # <RPG> (Nintendo) {2013.07.18} (¥4.800) - 392.372 
19. [PS3] Dynasty Warriors 8 # <ACT> (Koei Tecmo) {2013.02.28} (¥7.560) - 354.980
20. [PSV] God Eater 2 # <ACT> (Bandai Namco Games) {2013.11.14} (¥5.980) - 354.498
21. [3DS] Phoenix Wright: Ace Attorney - Dual Destinies <ADV> (Capcom) {2013.07.25} (¥5.990) - 353.211
22. [WII] Taiko no Tatsujin Wii: Super Deluxe Edition # <ACT> (Bandai Namco Games) {2012.11.29} (¥5.040) - 323.439 / 632.123
23. [3DS] Youkai Watch <RPG> (Level 5) {2013.07.11} (¥4.800) - 286.453
24. [PS3] Gran Turismo 6 # <RCE> (Sony Computer Entertainment) {2013.12.05} (¥6.980) - 282.686
25. [3DS] Dragon Ball Heroes: Ultimate Mission <TBL> (Bandai Namco Games) {2013.02.28} (¥5.800) - 282.561

26. [PS3] Call of Duty: Ghosts - Subtitled Edition <ACT> (Square Enix) {2013.11.14} (¥7.980) - 278.821
27. [3DS] Donkey Kong Country Returns 3D <ACT> (Nintendo) {2013.06.13} (¥4.800) - 277.256
28. [PS3] World Soccer Winning Eleven 2014 <SPT> (Konami) {2013.11.14} (¥7.980) - 261.227
29. [3DS] Mario Kart 7 <RCE> (Nintendo) {2011.12.01} (¥4.800) - 261.070
30. [3DS] Shin Megami Tensei IV # <RPG> (Atlus) {2013.05.23} (¥6.980) - 251.334
31. [3DS] Professor Layton and the Legacy of Civilization A <ADV> (Level 5) {2013.02.28} (¥5.500) - 249.366
32. [PS3] Final Fantasy XIV Online: A Real Reborn # <RPG> (Square Enix) {2013.08.27} (¥3.300) - 244.574
33. [PS3] Earth Defense Force 2025 <ACT> (D3 Publisher) {2013.07.04} (¥6.980) - 241.366
34. [PS3] Gundam Breaker <ACT> (Bandai Namco Games) {2013.06.27} (¥7.980) - 237.051 
35. [PSV] Toukiden # <ACT> (Koei Tecmo) {2013.06.27} (¥6.090) - 229.455 
36. [PS3] The Last of Us <ADV> (Sony Computer Entertainment) {2013.06.20} (¥5.980) - 226.268
37. [3DS] The Legend of Zelda: A Link Between Worlds # <ADV> (Nintendo) {2013.12.26} (¥4.800) - 225.418
38. [PS3] Kingdom Hearts HD 1.5 ReMIX <RPG> (Square Enix) {2013.03.14} (¥6.980) - 223.770
39. [WIU] Pikmin 3 <ACT> (Nintendo) {2013.07.13} (¥5.985) - 222.909
40. [PS3] Jikkyou Powerful Pro Baseball 2013 <SPT> (Konami) {2013.10.24} (¥3.980) - 215.537
41. [PS3] Dragon's Dogma: Dark Arisen <ACT> (Capcom) {2013.04.25} (¥4.990) - 207.617
42. [3DS] Tousouchuu: Shijou Saikyou no Hunter-Tachi Kara Nigekire! <ACT> (Bandai Namco Games) {2012.07.05} (¥5.040) - 201.282 / 552.805
43. [PSP] Sword Art Online: Infinity Moment # <RPG> (Bandai Namco Games) {2013.03.14} (¥6.280) - 200.845
44. [3DS] Monster Hunter 3 Ultimate (Best Price!) <ACT> (Capcom) {2012.11.15} (¥3.800) - 200.692 / 334.860
45. [3DS] Taiko no Tatsujin: Chibi Dragon to Fushigi na Orb <ACT> (Bandai Namco Games) {2012.07.12} (¥5.040) - 196.975 / 548.998
46. [3DS] Battle For Money Sentouchuu: Densetsu no Shinobi no Survival Battle! <ACT> (Bandai Namco Games) {2013.10.17} (¥4.980) - 194.918 
47. [PSV] Soul Sacrifice # <ACT> (Sony Computer Entertainment) {2013.03.07} (¥5.980) - 190.592
48. [PS3] Pro Baseball Spirits 2013 <SPT> (Konami) {2013.03.20} (¥7.980) - 189.330
49. [PS3] Resident Evil: Revelations <ADV> (Capcom) {2013.05.23} (¥4.990) - 188.851
50. [3DS] One Piece: Unlimited World Red # <ADV> (Bandai Namco Games) {2013.11.21} (¥5.980) - 186.817

51. [PS3] Final Fantasy X/X-2 HD Remaster <RPG> (Square Enix) {2013.12.26} (¥7.140) - 182.638 
52. [PS3] DmC: Devil May Cry <ACT> (Capcom) {2013.01.17} (¥6.990) - 182.607
53. [PSP] God Eater 2 <ACT> (Bandai Namco Games) {2013.11.14} (¥5.980) - 180.781 
54. [3DS] Super Robot Wars UX # <SLG> (Bandai Namco Games) {2013.03.14} (¥7.140) - 177.132 
55. [PS3] Battlefield 4 <ACT> (Electronic Arts) {2013.11.07} (¥7.665) - 175.196 
56. [PS3] Kamen Rider: Battride War # <ACT> (Bandai Namco Games) {2013.05.23} (¥7.480) - 174.789 
57. [3DS] Aikatsu! 2-nin no My Princess <SLG> (Bandai Namco Games) {2013.11.21} (¥5.480) - 170.716 
58. [PSP] Pro Baseball Spirits 2013 <SPT> (Konami) {2013.03.20} (¥3.980) - 170.684 
59. [3DS] Paper Mario: Sticker Star <ADV> (Nintendo) {2012.12.06} (¥4.800) - 170.061 / 561.139
60. [3DS] Inazuma Eleven Go Galaxy: Big Bang / Supernova <RPG> (Level 5) {2013.12.05} (¥5.500) - 169.867
61. [WIU] Nintendo Land # <ETC> (Nintendo) {2012.12.08} (¥4.935) - 168.580 / 382.954
62. [3DS] Super Mario 3D Land # <ACT> (Nintendo) {2011.11.03} (¥4.800) - 165.192 / 1.945.812
63. [PS3] Hatsune Miku: Project Diva f <ACT> (Sega) {2013.03.07} (¥7.329) - 160.219
64. [3DS] Attack on Titan: The Last Wings of Mankind <ACT> (Spike Chunsoft) {2013.12.05} (¥6.090) - 158.179
65. [PSP] Toukiden <ACT> (Koei Tecmo) {2013.06.27} (¥5.040) - 155.473
66. [3DS] Fantasy Life <RPG> (Level 5) {2012.12.27} (¥5.800) - 154.263 / 288.271
67. [PS3] Dragon's Crown <ACT> (Atlus) {2013.07.25} (¥8.190) - 151.681
68. [PS3] New Dynasty Warriors: Gundam <ACT> (Bandai Namco Games) {2013.12.19} (¥7.980) - 150.787
69. [PSV] Senran Kagura Shinovi Versus: Otome Shoujotachi no Shoumei # <ACT> (Marvelous AQL) {2013.02.28} (¥6.980) - 145.979
70. [PS3] Warriors Orochi 3: Ultimate # <ACT> (Koei Tecmo) {2013.09.26} (¥6.615) - 139.869 
71. [PS3] Naruto Shippuden: Narutimate Storm 3 <FTG> (Bandai Namco Games) {2013.04.18} (¥7.480) - 137.343
72. [3DS] Hatsune Miku: Project Mirai 2 # <ACT> (Sega) {2013.11.28} (¥6.279) - 134.785 
73. [PSV] Final Fantasy X/X-2 HD Remaster: Twin Pack # <RPG> (Square Enix) {2013.12.26} (¥7.140) - 134.645
74. [NDS] Pokémon Black 2 / White 2 <RPG> (Pokémon Co.) {2012.06.23} (¥4.800) - 133.026 / 3.012.053
75. [3DS] Etrian Odyssey Untold: The Millenium Girl <RPG> (Atlus) {2013.06.27} (¥6.279) - 130.274

76. [PSP] Summon Night 5 <SLG> (Bandai Namco Games) {2013.05.16} (¥5.980) - 129.557
77. [WII] Dragon Quest X: Nemureru Yuusha to Michibiki no Meiyuu Online <RPG> (Square Enix) {2013.12.05} (¥3.990) - 127.592 
78. [3DS] Inazuma Eleven Go 2: Chrono Stone - Neppuu / Raimei <RPG> (Level 5) {2012.12.13} (¥5.500) - 126.233 / 440.623
79. [PS3] Drakengard 3 <RPG> (Square Enix) {2013.12.19} (¥7.980) - 125.530
80. [PS3] Fist of the North Star: Ken's Rage 2 # <ACT> (Koei Tecmo) {2012.12.20} (¥8.190) - 122.345 / 290.354
81. [PSP] Jikkyou Powerful Pro Baseball 2013 <SPT> (Konami) {2013.10.24} (¥3.980) - 119.307
82. [PSV] The Legend Of Heroes: Sen no Kiseki # <RPG> (Nihon Falcom) {2013.09.26} (¥7.140) - 119.220
83. [PSP] 7th Dragon 2020-II <RPG> (Sega) {2013.04.18} (¥6.279) - 114.353
84. [PS3] Tales of Symphonia Chronicles <RPG> (Bandai Namco Games) {2013.10.10} (¥6.980) - 112.931 
85. [PS3] BlazBlue: Chronophantasma # <FTG> (Arc System Works) {2013.10.24} (¥7.140) - 112.026
86. [PSP] Uta no Prince-Sama: All Star # <ACT> (Broccoli) {2013.03.07} (¥6.090) - 111.898
87. [PS3] Armored Core: Verdict Day <ACT> (From Software) {2013.09.26} (¥6.800) - 111.898
88. [PSV] Dragon's Crown <ACT> (Atlus) {2013.07.25} (¥8.190) - 109.549
89. [PSV] Phantasy Star Online 2: Special Package <RPG> (Sega) {2013.02.28} (¥5.229) - 108.343
90. [PSP] Shining Ark <RPG> (Sega) {2013.02.28} (¥6.279) - 104.689
91. [PSV] One Piece: Pirate Warriors 2 <ACT> (Bandai Namco Games) {2013.03.20} (¥7.140) - 103.757
92. [WIU] New Super Luigi U <ACT> (Nintendo) {2013.07.13} (¥3.885) - 100.231
93. [PS3] Soccer Tsuku: Pro Soccer Club! <SLG> (Sega) {2013.10.10} (¥8.379) - 100.018
94. [PSV] Dangan-Ronpa 1-2: Reload <ADV> (Spike Chunsoft) {2013.10.10} (¥5.229) - 99.610
95. [3DS] Kuma-Tomo <ETC> (Bandai Namco Games) {2013.06.20} (¥4.980) - 99.283 
96. [PS3] Call of Duty: Black Ops II - Dubbed Edition <ACT> (Square Enix) {2012.12.20} (¥7.980) - 98.995 / 182.280
97. [PSP] Fate/Extra CCC # <RPG> (Marvelous AQL) {2013.03.28} (¥6.279) - 98.105
98. [3DS] Daigasso! Band Brothers P <ACT> (Nintendo) {2013.11.14} (¥4.800) - 97.982
99. [3DS] Professor Layton Vs. Ace Attorney <ADV> (Level 5) {2012.11.29} (¥5.980) - 96.693 / 328.861
100. [WIU] Taiko no Tatsujin: Wii U Version! # <ACT> (Bandai Namco Games) {2013.11.21} (¥5.480) - 96.076

Those #s dont include digital right?

It include vouchers (which shouldn't ever be considered digital sales to begin with), but actually unsure. They said they're going to start tracking digital sales, but I don't know if this rankings includes them.

It does not.

WOW great list... I will read more late.

Your right! This week's #s are  [3DS] Animal Crossing: New Leaf # <ETC> (Nintendo) {2012.11.08} (¥4.800) - 5.663 / 4.072.068

Digital sales are over 800k i believe. I need to check again. If it is near 800k God Damn!!! thats 4.8mil o.O

Top selling console game in Japan for 2013 was GTA5!

<20% wouldn't be outrageous but is on the high end of digital/retail ratio.

Where are you getting 800k from?

Ohhh, I see your game Tbone.  I see through you.  You knew full well these were physical sales and you just came here to preach some more about digital sales and eShop rankings and other such nonsense.

Well, no more.  I hereby banish you from this thread.