Not even close:
-PS1: Crash Bandicoot and Crash Bandicoot Racing
-PS2: Jak and Daxter, Jak X: Combat Racing
-PS3: Uncharted and Last of Us
-PS4: Uncharted and Last of US
Now try to compare that with Rare just on N64 platform:
-Killer Instinct Gold
-Diddy Kong Racing
-Jet Force Gemini
-Donkey Kong 64
-Conker's Bad Fur Day
Rare just on N64 have more diverse games than Naughty Dog last 4 generations combined.
But what I find very impressive about Naughty Dog is they went from Crash Bandicoot to Last of US.
I agree that RARE was better, but a lot of the games you listed werent that good. BK, BT, 007, PD, CBFD and DKR are their god tier games for the system. The rest are forgettable.