2x: MGS4, RaC: Tools of Destruction, God of War II, RaC: Size Matters
Multiple times: RaC: Up Your Arsenal, Ratchet: Deadlocked, Warcraft III, Age of Empires II, The Frozen Throne, Age of Mythology, Populous, all of the Pokemon games on GB/GBC/GBA
Probably more, but I can't remember them right now.