Best Shooter:
1. Metroid Prime Trilogy

Best Action-Adventure:
1. Metroid Prime Trilogy
2. Madworld
3. Muramasa: The Demon Blade

Best Fighter:
No vote

Best Platformer:
1. New Super Mario Bros. Wii

Best Racing:
No vote

Best RPG:
1. Muramasa: The Demon Blade

Best Puzzle Game:
No vote

Best Music & Peripheral:
1. Guitar Hero Metallica

Strategy & Simulation:
1. Little King's Story
2. Dawn of Discovery

Best Sports:
1. Wii Sports Resort

Best WiiWare:
1. Lost Winds 2

Best Graphics:
1. The Conduit
2. Silent Hill: Shattered Memories

Best Original Music Score:
1. Metroid Prime Trilogy
2. Madworld
3. Guitar Hero Metallica

Most Innovative:
1. Wii Sports Resort
2. Madworld

Biggest Disappointment:
1. The Conduit

Best Game No One Played:
1. Little King's Story
2. Dawn of Discovery
3. Muramasa
4. Madworld

Most Anticipated Game:
1. Mario Galaxy 2
2. Tales of Graces
3. Monster Hunter 3
4. Red Steel 2

Wii Game of the Year:
1. New Super Mario Bros Wii
2. Little King's Story
3. Metroid Prime Trilogy

I'm sure I will miss some, but here are my votes:

Best Shooter:

1. Dead Space: Extraction
2.  MW:R
3. Metroid: Trilogy
4. HoTD: Overkill
5. RE: DSC

Best Action Adventure:

1. Silent Hill
2. Rabbids Go Home
3. Cursed Mountain
4. Madworld
5. Tenchu
6. Deadly Creatures

Best Fighter:

1. Punch-out!

Best Platormer:

1. NSMB Wii
2.  Lostwinds 2
3. Mushroom Men
4. A Boy and His Blob

Best Racer:

1. Excitebots: Trick Racing
2. Need For Speed: Nitro
3. Excitebike

Best RPG:

1. Muramasa

Best Puzzle Game:

1. LIT
2. Boom Blox: BP
3. Silent Hill

Best Strategy and Simulation:

1. Overlord: DL
2. Dawn of Discovery
3. Little King's Story

Best Sports:

1. NHL 2k10
2. Tiger Woods '10
3. Skate It
4. Wii Sports Resort
5. Grand Slam Tennis

Best WiiWare:

1. Lit
2. Lostwinds 2
3. Excitebike.

Best Graphics:

1. Silent Hill
2. Dead Space Extraction
3. RE:DSC
4. NSMB Wii
5. Spyborgs

Best original music score:

1. Silent Hill

Most Innovative:

1. Wii Sports Resort
2.  Tiger Woods '10
3. Grand Slam Tennis
4. NHL 2k10
5. Virtual Tennis

Biggest Dissapointment:

1. The Conduit
2. Madden '10

Best Game No One played:

1. Overlord Wii
2. Cursed Mountain
3. Deadly Creatures

Most anticipated game:

1. Red Steel 2

Wii GOTY:

1. Silent Hill
2. HotD Overkill
3. Dead Space Extraction
4.  NHL 2k10

Shovelware of the year:

1. Cold Stone Creamery: Scoop it up 

W00T 200th post! I can vote!

Best Shooter:
The Conduit
Metroid Prime Trilogy
Call of Duty: Modern Warfare: Reflex Edition
Ghostbusters: The Game



Best Action-Adventure:
Rabbids Go Home
Metroid Prime Trilogy



Best Fighter:
Naruto Shipuuden: Clash of Ninja Revolution 3


Best Platformer:
New Super Mario Bros. Wii



Best Racing:
Excitebots: Trick Racing



Best RPG:
... have none


Best Puzzle Game:
...


Best Music & Peripheral:
DJ Hero



Strategy & Simulation:
...

Best Sports:
Wii Sports Resort
Tiger Woods '10
PES '10

Best WiiWare:
...

Best Graphics (open voting)

Metroid Prime Trilogy

Best Original Music Score (open voting)

NSMB:Wii

Most Innovative (open voting)

NSMB:Wii

Biggest Disappointment (open voting)

Mad World

Best Game No One Played (open voting)

The Conduit

Most Anticipated Game (open voting)

NSMB:Wii
Wii Game of the Year (open voting)

NSMB:Wii

Best Shooter:
1. The House of the Dead: Overkill


Best Action-Adventure:
1. Muramasa: The Demon Blade
2. Spore Hero

Best Platformer:
1. New Super Mario Bros. Wii
2. Lost Winds 2


Best RPG:
1. Rune Factory Frontier
2. Final Fantasy IV: The After Years
3. Muramasa: The Demon Blade


Best Puzzle Game:
1. Boom Blox Bash Party


Strategy & Simulation:
1. Rune Factory: Frontier
2. Little King's Story
3. Swords and Soldiers
4. Final Fantasy Crystal Chronicles: My Life as a Darklord
5. Dawn of Discovery

Best Sports:
1. Wii Sports Resort


Best WiiWare:
1. Final Fantasy IV: The After Years
2. Lost Winds 2
3. Swords and Soldiers
4. Final Fantasy Crystal Chronicles: My Life as a Darklord


Best Graphics:
1. Rune Factory Frontier
2. Final Fantasy 4: The After Years
3. Little King's Story
4. Muramasa: The Demon Blade
(Weird I know, but it's my taste)

Best Original Music Score:
1. House of the Dead: Overkill
2. Rune Factory Frontier
3. New Super Mario Brothers Wii
(Wish I could put little King's Story as #1 here, but it isn't original music)


Most Innovative:
1. Wii Fit Plus
2. Wii Sports Resort

Biggest Disappointment (open voting)
1. MadWorld


Best Game No One Played (open voting)
1. Rune Factory Frontier
2. Little King's Story


Most Anticipated Game:
1. Legend of Zelda Wii
2. Metroid: Other M
3. Final Fantasy Crystal Bearers
4. Sin and Punishment 2
5. Arc Rise Fantasia
6. Fragile
7. Castlevania Rebirth
8. Endless Ocean 2

Wii Game of the Year
1. Rune Factory Frontier
2. Little King's Story
3. Final Fantasy 4: The After Years
4. New Super Mario Bros. Wii
5. Wii Fit Plus

Too bad many people haven't played Silent Hill. It should be a serious contender for game of the year.

Anyway, I have one question. Can we vote for another game that isn't there? On WiiWare I loved Contra and Gradius Rebirth but aren't there.

I'll wait for an answer, meanwhile:

Best Shooter:
Metroid Prime Trilogy
The Conduit


Best Action-Adventure:
Silent Hill: Shattered Memories
Metroid Prime Trilogy
Muramasa: The Demon Blade
MadWorld


Best Fighter:
Punch-Out!!


Best Platformer:
New Super Mario Bros. Wii


Best Racing:
Excitebots: Trick Racing


Best RPG:
Muramasa: The Demon Blade


Best Puzzle Game:
N/A

Best Music & Peripheral:
N/A


Strategy & Simulation:
N/A


Best Sports:
Wii Sports Resort
PES '09 (was released this year)


Best WiiWare:
N/A


Best Graphics:
Silent Hill Shattered Memories
Muramasa The Demon Blade


Best Original Music Score:
Silent Hill Shattered Memories


Most Innovative:
Silent Hill Shattered Memories


Biggest Disappointment:
TMNT Smash Up
Spyborgs


Best Game No One Played:
Silent Hill Shattered Memories
Bonsai Barber

Most Anticipated Game:

Zelda Wii

Mario Galaxy 2
Dynamic Slash
Red Steel 2

Wii Game of the Year:
1. Silent Hill Shattered Memories
2. New Super Mario Bros Wii

Yes you can vote for any game that fits. Even those not on the list. And yes Silent Hill is certainly the best game of the year. And M+ games really are  the innovation of the year.

Thanks averyblund :)