I love how a number of people are attacking the list for being stupid (and it certainly is), and are then following the same logic used in the article, comparing individual developers to far larger development houses.
Nintendo > Naughty Dog. No shit. Nintendo is a collection of 10+ studios. Naughty Dog is a single studio. I could say that Sony Worldwide Studios > Retro, but I won't, because that would be idiotic.
Comparing Nintendo EAD Group 3 (Zelda), Naughty Dog, Kojima Productions, and Infinity Ward = ok!
Comparing Nintendo, Sony, Konami, and Activision = ok!
Comparing Nintendo, Naughty Dog, Kojima Productions, and Infinity Ward (like the original article) = wtf!