I'm just skipping from first post to this post so just keep that in mind.
Anyway, that's kind of weird and I don't have that problem. If I start a movie or something like that, I always turn off the controller. I believe an auto-turn off when the PS3 is idle was added in a patch, but I'm usually making sure that the controller is off when it needs to be.
I know the included USB wire for charging the PS3 controller is very short, but you can pick up some really cheap USB extensions online, I was stupid and I should have picked up longer ones, but I got a couple of 6 foot ones for like a few bucks each that I use to plug it into the PS3 and play from the couch.
"Each time my controller sits there flashing at me not letting me play a game when I actually want to I plug my controller into the PS3 and let it sit for a few hours. I can't really play while it's charging because the cord I have is ridiculously short and I know it does actually charge my controller."
Have I read this right? When you plug the controller in, it flashes? That is something it should do and pressing the PS button will activate it. I know that pressing the PS button when the PS3 has no power in it will cause it to stay on in that search mode (flashing lights) for a little while, maybe something presses the PS button?
lol, I hope the Dualshock 3 is better regardless whether I use rumble or not. I like how the Sixaxis is so light, but I'm not liking how cheap it feels. The triangle button sticks every now and then, it cuts out in some games, and now the left analog stick looks like it's breaking down and it's slightly tilted forward.