A lot of people seem to be ignoring the handheld front, which to me has the quality of the old squaresoft, and yes I am someone who has heavily bashed Square Enix before.
HD Console Rundown:
Square Enix has everything in perfect order here as well, the only problem SE really has is Tri-Ace games, which seem subpar this generation.
Final Fantasy XIII was better than last two mainline Final Fantasy games (at least to me and few others).
Final Fantasy XIII (The other one) looks in good order.
Last Remnant which had a poor console choice release, and is actually decent in battle style.
Front Mission looks like it is coming in perfect order.
Nier was also really good game, and I should put it in my wishlist (I rented it).
Final Fantasy XIV looks like it is awesome and much better than Final Fantasy XI.
Eidos has been doing the best work they have done in years.