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JWeinCom said:
Depends how it works. On the 3DS switching SD cards is a major pain in the ass. Hopefully they streamlined the process.

Lost all my save files on my eshop games when I tried to do a system transfer from original 3DS to New 3DS XL.  My account transferred but it messed up during the process and failed to move any saved files.  Luckily it didn't affect save files on my 3DS physical games.