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BraLoD said:
Start from Yellow, Gen 1 to 4 always pick the third version.
Yellow, Crystal, Emerald and Platinum.

I completely agree here.

Also, if you want to make the game a bit more interesting, once you complete yellow and understand how the game works a bit, use a modified rules for the following entries.

 

Basically, there's a user imposed rules (I forget the name) but the rules are:

You can only catch the first Pokémon you encounter on each screen. You cannot revive fainted pokemon. And you must name all the pokemon you catch.

 

It's a bit hard, so I might suggest you change this to:

Can catch any five you first meet in any area. Must let all but two go once they are all caught.

Cannot revive at the pokemon center.

Must name all your pokemon

 

It makes the game way more interesting.