Here's what I know I have off the top of my head. I'd have to check my collection at home for others. Games are complete, unless otherwise specified. Rarity is based off of PriceCharting.com
NES:
Dragon Warrior III (loose)
Dragon Warrior IV (loose)
Sega Genesis:
Warsong (loose)
Nintendo 64:
Ogre Battle: Person of Lordly Caliber (loose)
The Legend of Zelda: Majora's Mask
Starcraft 64
Sega Saturn:
Dragon Force
Three Dirty Dwarves
PS1:
Persona 2: Eternal Punishment
Lunar Silver Star Story
Vanguard Bandits
Ogre Battle: March of the Black Queen
Gamecube:
The Legend of Zelda: Collector's Edition
The Legend of Zelda: Ocarina of Time Master Quest
Wii:
Xenoblade Chronicles
Fire Emblem: Radiant Dawn