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Samus Aran said:

If you have a HD TV any Wii game looks horrible, so I would go for the 3DS version. It has some extra content as well. Though the Wii version probably performs better.

I think so. I read somewhere that the Wii version is 60fps, while the 3DS version is 30fps. 

I don't think you could go wrong with either decision, so I'd just get the one you can find a better deal on.