I only count ones that had prequels I actually liked. I would put FFXIII but I've never thought FF was much good, for example.
- Metal Gear Solid 2
- Metal Gear Solid 4
- Majora's Mask
- Wind Waker
- Mario Sunshine
- Starfox Adventures
- Starfox Assault
- Starfox Command
- Halo 2
- Halo 3
- Modern Warfare 2
- Resident Evil 5
- Metroid Other M