I agree with the story thing. They're Nintendo games after all.
For Zelda, whether it's top-down or 3D, I won't mind. Edit: I would prefer it to be top-down now that I think about it.
For Metroid, whether it's 2D or 3D, I won't mind. Edit: You know what, for handheld Metroid, 2D would be the better
choice.







