Okay list time. I don't have much time these days, with girls and finals and music so. I lost my good list so I'll work and change my current list. To keep this topic less cluttered I'll post my reasons in the discussion.
Also this list isn't just technical quality. I am not separating Nostalgia here. And I had limited of games when I was a childhood and played them to death. Thus resulting them in maybe being higher or Lower than they should be.
#50 Kingdom Hearts 2
#49 Final Fantasy VII: Crisis Core
#48 Metal Gear Solid: Ghost Babel
#47 Star Wars Episode 1 Racer
#46 Zelda II: Adventures of Link
#45 Vagrant Story
#44 Shadows of The Collosus
#43 Persona 3
#42. Lara Croft and The Guardian of Light
#41 Final Fantasy IX
#40 Bioshock
#39 Super Mario Bros 3
#38 Batman Arkham Asylum
#37 Tomb Raider: Underworld
#36 Super Mario World
#35 Final Fantasy 7
#34 Final Fantasy 5
#33 Star Fox 64
#32 Ninja Gaiden
#31 Half Life 2
#30 Knights of the Old Republic II
#29 Grand Theft Auto San Andreas
#28 Elder Scrolls III: Morrowind
#29 Zone of the Enders Second Runner
#28 Silent Hill 2