Man, you guys are sure taking this far... I don't think Nintendo ever intended WW's story to go so deep, or to have such hidden meanings. Miyamoto himself has stated on numerous occasions that they develop the gameplay first, then the levels, and that story is one of the very final things put into any Zelda game, molding it as they see fit around the gameplay and levels that are already in place by that time. That's also why there's no overlapping chronological timeline and why so many things in Zelda games don't make sense when compared to other games in the series.
Still, it's a fun and good analysis, kudos to you guys for taking the trouble to do so. 
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