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Rhonin the wizard said:

This wouldn't be the first licensed game Nintendo worked on. They also published some games based on the Eyeshield 21 manga, though I don't know who developed them.

8ing developed them.

 

Full(ish) list of Nintendo produced (or co-produced) licensed games...

  • [G&W] Mickey Mouse (Nintendo) 1981
  • [G&W] Popeye (Nintendo) 1981
  • [AC] Popeye (Nintendo) 1982
  • [G&W] Snoopy Tennis (Nintendo) 1982
  • [NES] Popeye (Nintendo) 1983
  • [G&W] Snoopy (Nintendo) 1983
  • [G&WP] Mickey Mouse (Nintendo) 1983
  • [G&WP] Popeye (Nintendo) 1983
  • [G&WP] Snoopy (Nintendo) 1983
  • [FDS] All Night Nippon Super Mario Bros. (Nintendo) 1986
  • [NES] Dream Factory: Doki Doki Panic (Nintendo) 1987
  • [NES] Mike Tyson's Punch-Out! (Nintendo) 1987
  • [FDS] Miho Nakayama's Heartbeat Highschool (Nintendo) 1987
  • [GB] Tetris (Nintendo) 1989
  • [NES] Tetris (Nintendo) 1989
  • [GB] Qix (Taito) 1990
  • [NES] Bill Barker's Trick Shooting (Nintendo) 1990
  • [SNES] Sim City (Nintendo) 1991
  • [SNES] Super Play Action Football (Nintendo) 1992
  • [SNES] NCAA Basketball (Sculptured Software) 1992
  • [GB] Tetris 2 (Bullet Proof Software) 1993
  • [NES] Tetris 2 (Bullet Proof Software) 1993
  • [SNES] NHL Stanley Cup (Sculptured Software) 1993
  • [SNES] Ken Griffey Jr. presents Major League Baseball (Software Creations) 1994
  • [GB] Wario Blast! featuring Bomberman (Hudson) 1994
  • [SNES] Tetris & Dr. Mario (Bullet Proof Software / Nintendo) 1994
  • [SNES] Kirby's Avalanche (Compile / HAL Laboratory) 1995
  • [SNES] Ken Griffey Jr.'s Winning Run (Rareware) 1996
  • [VB] 3D Tetris (T&E Soft) 1996
  • [SNES] Tetris Attack (Intelligent Systems) 1996
  • [GB] Tetris Attack (Intelligent Systems) 1996
  • [GB] Ken Griffy Jr. presents Major League Baseball (Software Creations) 1997
  • [N64] Tetrisphere (H2O Entertainment) 1997
  • [N64] Goldeneye 007 (Rareware) 1997
  • [GB] James Bond 007 (Saffire) 1998
  • [N64] Kobe Bryant in NBA Courtside (Leftfield Productions) 1998
  • [N64] Major League Baseball featuring Ken Griffey Jr. (Angel Studios) 1998
  • [N64] Waialae Country Club: True Golf Classics (T&E Soft) 1998
  • [GBC] Tetris DX (Nintendo) 1998
  • [SNES] Power Lode Runner (T&E Soft) 1999
  • [GBC] Beaty and the Beast: A Boardgame Adventure (Leftfield Productions) 1999
  • [N64] Command & Conquer (Looking Glass Studios) 1999
  • [GBC] Ken Griffey Jr.'s Slugfest (Leftfield Productions) 1999
  • [N64] Ken Griffey Jr.'s Slugfest (Angel Studios) 1999
  • [GBC] NBA 3-on-3 (Leftfield Productions) 1999
  • [N64] NBA Courtside 2 featuring Kobe Bryant (Leftfield productions) 1999
  • [N64] The New Tetris (H2O Entertainment) 1999
  • [GBC] Mickey's Racing Adventure (Rareware) 1999
  • [GBC] Quest for Camelot (Titus Software) 1999
  • [GBC] R-Type DX (Bits Studios) 1999
  • [N64] Ogre Battle 64: Personal of Lordly Caliber (Quest) 1999
  • [GBC] Bionic Commando: Elite Forces (Nintendo Software Technology) 2000
  • [N64] Ridge Racer 64 (Nintendo Software Technology) 2000
  • [64DD] Sim City 64 (HAL Laboratory) 2000
  • [GBC] Crystalis (Nintendo Software Technology) 2000
  • [GBC] The Little Mermaid II: Pinball Frenzy (Leftfield Productions) 2000
  • [GBC] Hamtaro: The Great Friendship Plan (PaxSoft Nica) 2000
  • [GBC] Phantom Zona (Nintendo) 2000
  • [N64] StarCraft 64 (Blizzard Entertainment / Mass Media) 2000
  • [N64] Mickey's Speedway USA (Rareware) 2000
  • [N64] Mystery Dungeon: Shiren the Wanderer 2 (Chunsoft) 2000
  • [GBC] Mickey's Speedway USA (Rareware) 2001
  • [GBC] Hamtaro: Ham-Hams Unite! (PaxSoft Nica) 2001
  • [GBA] Tactics Ogre: Knights of Lodis (Quest) 2001
  • [Pmini] Pokemon Shock Tetris (Jupiter) 2002
  • [GBA] Domokun's Mysterious Television (Suzak) 2002
  • [GC] NBA Courtside 2002 (Leftfield Productions) 2002
  • [GBA] Hamtaro: Ham-Ham Heartbreak (PaxSoft Nica) 2002
  • [GBA] Momoko Sakura Ukiuki Carnival (indieszero) 2002
  • [GBA] Disney's Magical Quest starring Mickey & Minnie (Capcom) 2002
  • [GC] Disney's Magical Mirror starring Mickey Mouse (Capcom) 2002
  • [GBA] Tengai: Oriental Blue (Hudson / RED) 2003
  • [GBA] Hamtaro: Rainbow Rescue (Alphadream) 2003
  • [GBA] Tope Gear Rally (Tantalus Software) 2003
  • [GC] Final Fantasy: Crystal Chronicles (Square Enix) 2003
  • [GBA] Hamtaro: Ham-Ham Games (Alphadream) 2004
  • [GC] Legend of Golfer (Seta) 2004
  • [DS] Brain-Age: Train Your Brain in Minutes a Day (Nintendo) 2005
  • [DS] Jump! Super Stars (Ganbarion) 2005
  • [GC] Dance Dance Revolution: Mario Mix (Konami / Hudson) 2005
  • [DS] Hamtaro Mystery Quiz: Castle in the Clouds (Alphadream) 2005
  • [GBA] EyeShield 21: Devilbats Devildays (8ing) 2006
  • [DS] EyeShield 21: Max Devil Power! (8ing) 2006
  • [DS] True Swing Golf (T&E Soft) 2006
  • [DS] Tetris DS (Nintendo) 2006
  • [GC] Baten Kaitos Origins (Monolith Soft) 2006
  • [DS] Jump! Ultimate Stars (Ganbarion) 2006
  • [DS] Brain-Age 2: More Training in Minutes a Day (Nintendo) 2006
  • [Wii] EyeShield 21: the Field's Greatest Warrior (8ing) 2007
  • [Wii] Mario & Sonic at the Olympic Games (Sega) 2007
  • [DS] Mario & Sonic at the Olympic Games (Sega) 2008
  • [DS] The Glory of Heracles (Paon) 2008
  • [DS] Mystery Case Files: MillionHeir (Big Fish Games) 2008 
  • [Wii] Fatal Frame: Mask of the Lunar Eclipse (Tecmo / Grasshopper Manufacture) 2008
  • [Wii] Mario & Sonic at the Olympic Winter Games (Sega) 2009
  • [DS] Mario & Sonic at the Olympic Winter Games (Sega) 2009
  • [Wii] NHK Red & White Quiz Battle (???) 2009
  • [DS] America's Test Kitchen: Let's Get Cooking (indieszero) 2010

 

...didn't include digital releases like SFC BSX/WiiWare/DSiWare/Virtual Console (for my own sanity) or the 3rd party Famicom Mini/Classic NES games Nintendo selected and I may have missed a few...