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Demotruk said:

I don't think Metroid Prime was a big change at all. It just transitioned the values of 2D Metroid into 3D. In that sense, it was an even smaller change than SMW -> Mario 64.

 

I consider this a bigger change because the values of a Metroid game are changing (though they were somewhat present in Fusion). Nobody played Metroid games for plot or to explore a character.

Exploration and big boss fights are still there in spades, and the atmosphere is apparently intact. That's not changing core Metroid values, it's just adding to them.