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sc94597 said:

*Spoilers*

Once ganon loses the triforce of power he is dead. He lost it in Windwaker(which I believe takes place in the Adult Timeline.) That means he died in Windwaker. It is believe that TLOZ  takes place after windwaker. This is because  the hyrule in TLOZ isn't the same one in OoT and therefore it must have been post-flood when a new Hyrule was found, either by Link and Tetra(Zelda) or the Deku Tree's plan worked out where they created a new hyrule. That is at least 2 different Ganondorfs, and there probably are more. Also any game after Twilight Princess(which I believe there aren't any, though I didn't go through research into making a timeline myself) there will also be a new Ganon because he dies there too.

It depends on how one interprets the series.  I think The Legend of Zelda is the first part of the series.

1. Triforce of Courage has not been created yet.

2. Master Sword has not been created yet.

These are created in later parts of the series.  However, I am not saying the other interpretation is wrong.  The story is not very clear and it is up to each gamer to decide which order it belongs.