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Quite close, only a 4k difference between both consoles.

Wii - 562,551
PS3 - 558,259

http://www.examiner.com/x-6894-SF-Console-Game-Examiner~y2009m6d14-Wii-overtakes-PS3-in-Japanese-hardware-sales-for-2009

The site also has a quite interesting set of numbers of the weeks after April 20th, this summer could represente a boost for Nintendo with Wii Sports resort and Monster Hunter 3, but they need something big for this holidays. (And honestly I don't think New Super Mario Bros'll be that big)