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OriGin said:
Metroid Prime (timeline wise) comes in between Metroid Prime 2 and Super Metroid

The first Mother Brain is destroyed at the original Metroid.

The second Mother Brain is destroyed in Super Metroid.

I am not sure if the final boss of Metroid II (GB) was a Mother Brain or not, cause I never played it but I believe it to be so.



There is many 'Mother Brains' and basically after seeing this I consider that they are Aurora units captured by Space Pirates and given 'evil' 'space pirate' like thoughts and patterns (the trailer talks about Male, Female and different judgements depending on their usage) to make it what we consider a 'Mother Brain'.

Geddit?

All the Primes are between Metroid/Zero Mission and Metroid II. The Mother Brain in Super Metroid is the rebuilt Mother Brain from the original Metroid, she's not a new unit. Prime 1 pretty much confirms that. So there are not "many" Mother Brains, there's only one that sustains Zebes.

Zero Mission and the e-Manga pretty much infer that the Chozo created Mother Brain. Unless Retro is doing some rather recent retconning, the Aurora units are based off of Chozo technology and not vice versa. There's a few notable differences between the Auroras and Mother Brain anyway.

Oh, and the final boss of Metroid II was the Queen Metroid.



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