F-Zero Maximum Velocity
F-Zero Climax (Japan only)
Mega Man Zero
Mega Man Zero 2
Mega Man Zero 3
Mega Man Zero 4
Mega Man Battle Network
Mega Man Battle Network 2
Mario & Luigi: Superstar Saga
Golden Sun
Sonic Battle
Sonic Advance
Sonic Advance 2
Metroid Fusion
Metroid Zero Mission
The Legend of Zelda: The Minish Cap
The Legend of Zelda: Four Swords + ALTTP
Fire Emblem: The Sacred Stones
Castlevania: Harmony of Dissonance
Pokémon Ruby
Pokémon Fire Red
Gunstar Super Heroes
etc.
Too many to list.
Random game thought :
Why is Bionic Commando Rearmed 2 getting so much hate? We finally get a real game and they're not even satisfied... I'm starting to hate the gaming community so f****** much...