Nice thread. Ill vote later since Ill need some time to think and organize.

Do I have to list 5 for each category? Can I just put one or two? Please!?

You can vote up to 5 for each category. It's not mandatory (for example, I only have 4 choices in the "2D Zelda" category since I've only played 4 2D Zeldas :P), so vote how you want to vote! ^_^

 Amazing job smeags!!

Favorite NPC Protagonist 

1- Marin (Links awakening)

2- Link (Goron from OoT)

3- Hero´s spirit (TP) 

4-  Darunia (Oot)

5- photographer (ooT)

• Favorite Sidekick

• Zelda (Spirit Tracks)
• Midna (Twilight Princess)
• Navi (Ocarina of Time)
• Captain Linebeck (Phantom Hourglass)
• Ciela (Zelda PH)

Favorite Antagonist

1- Ganondorf (OoT)

 2-Nightmare (Link's Awakening)

 3- Ganondorf (TP)

 4- Majora's Mask (Majora's Mask)

 5- Zant (Twilight Princess) 

Least Favorite Character:

none

Favorite Non-Ganondorf Boss

1- Nightmare (Links awakening)

2-argorok (ZTP)

3-Stallord (ZTP)

4-Goth (ZMM)

5-Jalhalla (ZWW)

Favorite Ganon/Ganondorf Boss

• The Legend of Zelda: The Wind Waker (GCN)
• The Legend of Zelda: Twilight Princess (GCN/Wii)
• The Legend of Zelda: A Link to the Past (SNES)
• The Legend of Zelda: Ocarina of Time (N64)
• The Legend of Zelda (NES)

Favorite Enemy

1-Lizalfos (TP)

2-stalfos (TP)

3-ice wolves (TP)

Favorite Mode of Transportation

1- Flying roaster

2- Epona

3- King of Red Lions

4- Spirit Train

Favorite Temple/Dungeon

1- city in the sky (ZTP)

2- Shadow temple (OoT)

3-temple of Ice (ZPH)

4-earth temple (ZWW)

5-face shrine (Links awakening)

Favorite 2D Style Game

1-The Legend of Zelda: Link's Awakening DX (GB/GBC)

2- The Legend of Zelda: A Link to the Past (SNES)

3- The Legend of Zelda

4- The Legend of Zelda: Spirit Tracks (DS)

5- The Legend of Zelda: Phantom Hourglass (DS)

Favorite 3D Style Game

1- The Legend of Zelda: Ocarina of Time (N64)

2- The Legend of Zelda: Twilight Princess (GCN/Wii)

3-The Legend of Zelda: Majora's Mask (N64)

4-The Legend of Zelda: The Wind Waker (GCN)

Favorite Moment

1- Link and Marin watching the sunset

Least Favorite Moment

Say good bye to Marin...

Favorite NPC Protagonist (Excluding Link, Zelda, and all sidekicks)

- Impa (Zelda II)
She's the only one I remember. Thanks to the drawings in the instruction booklet.

Favorite Sidekick

• King of Red Lions (Wind Waker)
• Midna (Twilight Princess)
• Navi (OoT)

Favorite Antagonist

• Ganon (Various)
• Ganondorf (Various)
• Agahnim (A Link to the Past)

Least Favorite Character

• Tingle

Favorite Non-Ganondorf Boss

•  Agahnim
• The Knights in the first palace (ALttP)
  

Favorite Ganon/Ganondorf Boss

• The Legend of Zelda: Ocarina of Time (N64)
• The Legend of Zelda: A Link to the Past (SNES)
• The Legend of Zelda: The Wind Waker (GCN)
• The Legend of Zelda: Twilight Princess (GCN/Wii)

Favorite Enemy

• Iron Knuckle
• Stalfos

Favorite Mode of Transportation

• Epona (Various)
• King of Red Lions (Wind Waker)
• Warping

Favorite Temple/Dungeon

Can't really say.

Favorite 2D Style Game

• The Legend of Zelda: A Link to the Past (SNES)
• The Legend of Zelda (NES)
• Zelda II: The Adventure of Link (NES)
• The Legend of Zelda: Link's Awakening (GB/GBC)

Favorite 3D Style Game

• The Legend of Zelda: Ocarina of Time (N64)
• The Legend of Zelda: The Wind Waker (GCN)
• The Legend of Zelda: Twilight Princess (GCN/Wii)
• The Legend of Zelda: Majora's Mask (N64)

Favorite Moment

• Retrieving the Master Sword in A Link to the Past

Least Favorite Moment

• Getting those stupid Triforce piece in Wind Waker

Don't know if I can finish this all at once but here goes:

Favourite Protagonist

1. Grandmother (Wind Waker)
2. Agitha (Twilight Princess)
3. Kaepora Gaebora (Ocarina of Time/Majora's Mask)
4. Nabooru (Ocarina of Time)
5. ...and Tingle...

Favourite Sidekick

1. Midna (Twilight Princess)
2. Navi (Ocarina of Time)
3. Captain Linebeck (Phantom Hourglass)
4. King of Red Lions (Wind Waker)
5. Tatl (Majora's Mask)

Favourite Antagonist

1. Ganondorf
2. Majora's Mask (Majora's Mask )
3. Ganon
4. Zant (Twilight Princess)
5. Agahnim (A Link to the Past)

Favourite Mode of Transportation

1. King of Red Lions (Wind Waker)
2. Epona (Ocarina of Time/Majora's Mask/Twilight Princess)
3. Ship with some name I've forgotten (Phantom Hourglass)

Favourite Temple/Dungeon (That's too hard, damnit!)

1. Spirit Temple (Ocarina of Time)
2. Stone Tower Temple (Majora's Mask)
3. Snowpeak Ruins (Twilight Princess)
4. Tower of the Gods (Wind Waker)

Favourite 2D Style Game

1. A Link to the Past
2. Phantom Hourglass
3. Minish Cap
4. Legend of Zelda
5. Link's Awakening DX

Favourite 3D Style Game

1. Ocarina of Time
2. Majora's Mask
3. Wind Waker
4. Twilight Princess

Favourite Moment

1. Getting Epona (Ocarina of Time)
2. Getting the Couple Mask (Majora's Mask)

Least Favourite Moment

1. Getting trapped in a locked room inside the final dungeon of Legend of Zelda because I missed the Magic Key, and had to slowly burn myself to death.

Time to join the Zeldaton!

Favorite NPC Protagonist (excluding Link, Zelda and all sidekicks)
1. Malo (TLOZ: Twilight Princess)
2. Tingle (TLOZ: The Wind Waker)
3. Rose and her little sons (TLOZ: The Wind Waker)

Favorite Sidekick
1. Midna
2. Navi
3. King of Red Lions

Favorite Antagonist
1. Ganondorf
2. Zant
3. Majora's Mask/Skull Kid

Least Favorite Character
-/

Favorite Non-Ganondorf boss
1. Twinrova (TLOZ: Ocarina of Time)
2. Bongo-Bongo (TLOZ: Ocarina of Time)
3. Majora's Mask (TLOZ: Majora's Mask)
4. Zant (TLOZ: Twilight Princess)

Favorite Ganon/Ganondorf boss
1. The Legend of Zelda Ocarina of Time
2. The Legend of Zelda The Wind Waker
3. The Legend of Zelda Twilight Princess

Favorite Enemy
1. Stalfos (TLOZ: Ocarina of Time)
2. Daknuts (TLOZ: The Wind Waker/Twilight Princess)

Favorite Mode of Transportation
1. Warping (TLOZ: Ocarina of Time/Majora's Mask/Twilight Princess)
2. Epona (TLOZ: Ocarina of Time/Twilight Princess)
3. King of Red Lions (TLOZ: The Wind Waker)

Favorite Temple/Dungeon
1.Ganon's Castle (TLOZ: Ocarina of Time)
2. Spirit Temple (TLOZ: Ocarina of Time Master Quest)
3. Shadow Temple (TLOZ: Ocarina of Time)
4. Ganon's Tower (TLOZ: A Link to the Past)

Favorite 2D Style Game
1. Zelda II The Adventure of Link
2. The Legend of Zelda A Link to the Past
3. The Legend of Zelda NES

Favorite 3D Style Game
1. The Legend of Zelda Majora's Mask
2. The Legend of Zelda Ocarina of Time
3. The Legend of Zelda The Wind Waker
4. The Legend of Zelda Twilight Princess

Favorite Moment
1. Ganon's Castle collapsing (TLOZ: Ocarina of Time)
2. Entering Twilight first time/Wolf Link trasnformation (TLOZ: Twilight Princess)
3. Link meets Midna in Hyrule Castle (TLOZ: Twilight Princess)
4. Zant attacks throne room in Hyrule Castle scene (TLOZ: Twilight Princess)
5. Every moment with Tingle in The Wind Waker (TLOZ: The Wind Waker)

Least Favorite Moment
1. Final - Every Zelda game :(

That was a very long explanation post, did you understand all that?

  Yes

>No

*Press A*

....Ouch!

Favourite NPC Protagonist

1. Saria (OoT)
2. Ilia (TP)
3.  Malon (OoT)
4. Malo (TP)
5. Lost Old Man (LttP)

Favourite Sidekick

1. Midna (TP)
2. Navi (OoT)
3. Tatl (MM)

Favourite Antagonist

1. Ganondorf
2. Ganon
3. Agahnim (LttP)
4. Zant (TP)

Least Favourite Character (only one choice way out in front here)

1. Tingle (WW)

Favourite Non-Ganondorf Boss

1. Lanmolas (LttP)
2. Volvagia (OoT)
3. Stallord (TP)
4. Zant (TP)
5. Agahnim (LttP)

Favourite Ganon/Ganondorf Boss

1. OoT
2. TP
3. LttP

Favourite Enemy

1. Darknut (TP)
2. Lizalfos (OoT)
3. Stalkin (TP)
4. Moblin (LoZ)
5. Armos (LttP)

Favourite Mode of Transportation

1. Epona

Favourite Temple/Dungeon

1. Jabu-Jabu's Belly (OoT)
2. Desert Palace (LttP)
3. Snowpeak Ruins (TP)
4. Cave of Ordeals (TP)
5. Fire Temple (OoT)

Favourite 2D Game

1. LttP
2. LoZ

Favourite 3D Game

1. OoT
2. TP
3. MM
4. WW

Favourite Moment

The first time you enter Hyrule Field during OoT and you see it open up in front of you.

Least Favourite Moment

I'll be incredibly harsh and say WW in its entirety.

OMG! i remember reading this a while back and ran away :( :P

will do this as soon as i can though

It's going to be a long post to do. I'll be back later.