The ones I can remember right now:
Sony
Dragon's Dogma on PS3 - 15 times (at least 5 times 100% completed: all Quests etc and Platinum)
Transistor on PS4 - 3 times (100% completed, Platinum)
Nintendo
The Legend of Zelda: Majora's Mask - 4 times 3x N64 1x3DS (once 100%)
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