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SuperNova said:
 

(As an aside the thought of having fucking worms living inside me makes my skin crawl....*shudder*)

 

Edit: Ok, had a quick look at the Wiki and it seems that, these are contracted by accidently drinking infected waterflee larvas. In that case my answer would be simple. Make sure suffcient infrastuckture is built to give the people accsess to clean water. Wich we should be doing anyways.

Exactly. They have sex inside you. I say to hell with them

It seems that they only interact with humans and water fleas (and water fleas only carry them), so I doubt their eradication would alter the ecosystem significantly.