Ocarina of Time would be that game if I had to pick one. The 3DS version is a hair better.
I'm going to throw a few others out there.
Metroid Prime
Super Metroid
Mario Bros. 3
Super Mario Bros.
Super Mario World
Mario Galaxy
Twilight Princess
Windwaker
Street Fighter II(and it's variations)
Bayonetta 2
Mario Kart 8
Contra
Shadow of Mordor
Demon's Souls
Mega Man 2
Ninja Gaiden relaunch on Xbox
Sonic CD
Aliens vs Predator arcade game(beat em up heaven)
GTA Vice City(oddly enough not overly big on the rest of the series)
Red Alert
Starcraft
and Tie Fighter. Great thread idea btw.