Another one here Tales of Xillia 2, they shipped, sold whichever 500,000 copies in Japan by March 2013 which is about half a year after the game came out but this site says it's only sold 450,000 copies.
I don't have a link but according to Media Create Metal Gear Solid 4 had sold 930,000 copies in Japan as of the end of 2012 but has only sold 830,000 copies as of present according to this site. That game's surely over 6 million.