I'm not really sure what thoughts you're wanting, butI have read quite a bit on Chaos theory and quantum mechanics, and yes classical physics and quantum physics are at a bit of an impasse since one is highly ordered and the other is statistical chaos. When I was 16 determinism hit me like a brick in the face and I thought I lacked free will, untill I started studying quantum physics a year later. It is comforting knowing that on some level things don't run like clockwork.
On the topic of God, I really don't think that proves god exists. The fact that things are chaotic and that proves god exists, that kind of negates the earlier argument that things are incredibly ordered and thus god exists. It's sort of a catch 22 where no matter what god exists. But I don't really even know if that's supposed to be implied in the article. Not really sure what the point of the article is to be honest.
You can find me on facebook as Markus Van Rijn, if you friend me just mention you're from VGchartz and who you are here.