• Bayonetta 2 again with a release month this time
• X again with an official title this time (full disclosure, I also predicted this last E3)
• Hyrule Warriors again with both of the above this time
• Sonic Boom Wii U & 3DS
• Super Smash Bros with 2 or 3 more new character reveals and a date for the 3DS version
• Zelda Wii U reveal trailer
• Animal Crossing Wii U
• A new Pokemon game for 3DS, be it Z, X2/Y2, 3rd gen remakes, or something else entirely
• Monster Hunter 4 Ultimate info including more specific release window
• Yarn Yoshi and/or SMTxFE might get a mention or a real trailer
• Majora's Mask 3D will happen against Nintendo's much better judgement because people begged for it
That about covers it. I do think Nintendo has other things in the pipeline, but I don't think they'll talk about something like Fatal Frame at E3 out of fear of it being overshadowed. I expect that sort of stuff to be saved for Nintendo Directs down the line, though it's possible they'll go all-out with whatever they've got.