A deeper look into the Big 3's internal and partnered studios

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Here's a list of developers Nintendo has worked with on exclusive titles:

AlphaDream – Mario & Luigi series
Ambrella – Pokémon Dash, Pokémon Rumble series, Pokémon Channel, My Pokémon Ranch Hey You, Pikachu!
Arika – Endless Ocean series, 3D Classics series
Artoon - Yoshi's Island DS, Yoshi Topsy-Turvy
Asobism Co., Ltd. - Freakyforms: Your Creations, Alive!, Freakyforms Deluxe: Your Creations, Alive!
Creatures Inc. – Pokémon Ranger series, PokéPark series, EarthBound (Mother) series (with HAL Laboratory and Brownie Brown)
Capcom – The Legend of Zelda: Oracle of Seasons and Oracle of Ages, The Legend of Zelda: The Minish Cap
Camelot Software Planning – Golden Sun series, Mario Tennis series, Mario Golf series
Curve Studios - Fluidity
Eighting - Kuru Kuru Kururin series, Master of Illusion
Ganbarion - Pandora's Tower
Game Freak - Pokémon series, Drill Dozer, Mario & Wario
Genius Sonority – Pokémon Colosseum, Pokémon XD: Gale of Darkness, Pokémon Battle Revolution, Pokémon Trozei!
Good-Feel – Wario Land: Shake It!, Kirby's Epic Yarn (with HAL Laboratory)
Grezzo - The Legend of Zelda: Ocarina of Time 3D, The Legend of Zelda: Four Swords Anniversary Edition
iNiS - Osu! Tatakae! Ouendan series, Elite Beat Agents
Jupiter - Mario's Picross series, Pokémon Pinball series, Picross DS, Picross E
Kuju Entertainment - Art Academy series, Battalion Wars series
Mistwalker - The Last Story
Monster Games – Excitebike series,[55] Pilotwings Resort
n-Space - Geist
Namco Bandai Games – Mario Baseball series, Super Smash Bros. 4 (with Sora Ltd.)
Next Level Games – Mario Strikers series, Punch-Out!!, Luigi's Mansion: Dark Moon
Noise – Custom Robo series[56]
Paon – Donkey Kong Barrel Blast, DK Jungle Climber, DK King of Swing, Glory of Heracles
Platinum Games – Wonderful 101, Bayonetta 2
Red Entertainment Corporation – Project Hacker, Fossil Fighters Series
Sandlot - Chōsōjū Mecha MG, Zangeki no Reginleiv
Sega - Mario & Sonic at the Olympic Games series
Skip Ltd. – Chibi-Robo! series, Art Style series, GiFTPiA, Captain Rainbow, Snowpack Park
Square Enix - Super Mario RPG: Legend of the Seven Stars (as Square), Fortune Street series, Mario Hoops 3-on-3, Mario Sports Mix (with SPD Group 4)
Suzak - Wario: Master of Disguise, F-Zero: Climax, F-Zero: GP Legend
syn Sophia – Style Savvy series
Tecmo Koei - Fatal Frame series, Pokémon Conquest, Metroid: Other M (with SPD Group 1), Ninja Gaiden 3: Razor's Edge (with Team Ninja)
Tose - The Legendary Starfy series, Game & Watch Gallery series, Super Princess Peach
Treasure Co., Ltd. – Wario World, Sin and Punishment Series
Vanpool – Dillon's Rolling Western, Tingle series, Paper Mario: Sticker Star (with Intelligent Systems)
Vitei - Steel Diver (with EAD Group 5), Rock N’ Roll Climber (with EAD Group 3)