The game with the most GOTY awards is...
The Elder Scrolls V: Skyrim - 131
Portal 2 - 44
Batman: Arkham City - 30
Uncharted 3: Drake's Deception - 12
The Legend of Zelda: Skyward Sword - 12
Gears of War 3 - 5
Battlefield 3 - 3
Dark Souls - 3
Deus Ex: Human Revolution - 5
L.A. Noire - 4
Call of Duty: Modern Warfare 3 - 2
Dead Island - 1
Dead Space 2 - 1
Disgaea 4: A Promise Unforgotten - 1
KillZone 3 - 1
LittleBigPlanet 2 - 1
Star Wars: The Old Republic - 2
The Witcher 2: Assassins of Kings - 2
http://gotypicks.blogspot.com/2011/09/2011-game-of-year.html