I´m a huge Nintendo fan, so please don´t kill me... but I hated the transition for both Zelda and Mario from 2d to 3d.
I´ll explain myself. I was a huge, huge fan of Super Mario World and The Legend Of Zelda: A Link To The Past. Both have worlds so rich in colours, textures and "details", that they were charming.
But then they turned Mario and Link into polygonal monsters.
I´m well aware what a big improvement it was for the entire industry, but back then, I couldn´t stand the changes they made as they just felt ugly to me.
But now, with perspective, I would say that Mario had a better transitioning, Link was even creepy to me, just look at him!
Well, we can agree on something, they both have aged very well, they are like a good wine haha.