So, my theory is that the staff that's been let go from Naughty Dog were the main players on TLoU.
They stayed on long enough to see the game through to completion on the ps4 (as well as the expansions) and were then let go. Possibly, they were all promised way too much in bonuses from the game, or simply through merit of their history on ps3 GOTYS commanded too much earnings potential. People who have left are already moving to key positions in other companies, so you can see their leverage was pretty solid.
So basically, the TLoU team was only employed for this one last game, making them the eponymous reference in TLoU.
Sounds just crazy enough to be true, eh?