1. [NDS] Pokemon Black/White (Pokemon) - 4,914,813
2. [PSP] Monster Hunter Portable 3rd (Capcom) - 3,480,989
3. [WII] New Super Mario Bros. Wii (Nintendo) - 1,599,845 / 4,084,995
4. [WII] Wii Party (Nintendo) - 1,539,228
5. [NDS] Dragon Quest VI (Square Enix) - 1,297,344
6. [NDS] Dragon Quest Monsters Joker 2 (Square Enix) - 1,276,303
7. [NDS] Tomodachi Collection (Nintendo) - 1,196,148 / 3,508,096
8. [WII] Super Mario Galaxy 2 (Nintendo) - 900,539
9. [NDS] Inazuma Eleven 3 Spark/Bomber (Level 5) - 890,440
10. [WII] Wii Fit Plus (Nintendo) - 849,664 / 2,148,197

11. [PSP] Metal Gear Solid Peace Walker (Konami) - 780,969
12. [WII] Super Mario All-Stars (Nintendo) - 753,019
13. [PSP] Kingdom Hearts: Birth by Sleep (Square Enix) - 733,248
14. [PSP} God Eater (Bandai Namco) - 617,828
15. [WII] Wii Sports Resort (Nintendo) - 577,042 / 2,119,848
16. [WII] Donkey Kong Country Returns (Nintendo) - 559,968
17. [PS3] Yakuza 4 (Sega) - 557,771
18. [PS3] Fist of the North Star: Ken's Rage (Koei Tecmo) - 553,229
19. [PS3] Gran Turismo 5 (SCE) - 545,127
20. [WII] Mario Kart Wii (Nintendo) - 527,874 / 2,977,636

21. [PSP] Monster Hunter Diary: Poka Poka Airu Village (Capcom) - 516,000
22. [NDS] Pokemon Heart Gold/Superior Silver (Pokemon) - 506,507 / 3,889,104
23. [PSP] Monster Hunter Portable 2nd G PSP The Best (Capcom) - 498,178 / 534,323
24. [NDS] Pokemon Ranger: Guardian Signs (Pokemon) - 495,493
25. [WII] Mario Sports Mix (Nintendo) - 422,045
26. [PSP] God Eater Burst (Bandai Namco) - 408,395
27. [NDS] The Legend of Zelda: Spirit Tracks (Nintendo) - 404,964 / 725,904
28. [PS3] Sengoku BASARA 3 (Capcom) - 384,632
29. [PS3] World Soccer Winning Eleven 2011 (Konami) - 366,594
30. [NDS] New Super Mario Bros. (Nintendo) - 355,639 / 6,015,225

31. [WII] Kirby's Epic Yarn (Nintendo) - 353,798
32. [PSP] Hatsune Miku: Project Diva 2nd (Sega) - 341,663
33. [NDS] Ni no Kuni (Level 5) - 332,311
34. [WII] Dragon Quest Monsters: Battle Road Victory (Square Enix) - 307,453
35. [NDS] Inazuma Eleven 3: World Challenge: The Ogre (Level 5) - 295,996
36. [PS3] Tales of Graces F (Bandai Namco) - 288,395
37. [PS3] Resident Evil 5 Gold Edition (Capcom) - 279,951
38. [NDS] Taiko Drum master DS Doloron! Yokai Daikessen! (Bandai Namco) - 279,568
39. [NDS] One Piece Gigant Battle! (Bandai Namco) - 265,653
40. [PSP] Kurohyou! Yakuza New Chapter (Sega) - 264,766

41. [NDS] Egoko Classroom DS (Nintendo) - 262,797
42. [PSP] Tactics Ogre (Square Enix) - 256,102
43. [PS3] White Knight Chronicles 2 (SCE) - 249,350
44. [NDS] Tongari Boushi and the Magic Shop (Konami) - 248,261
45. [PS3] Gundam Musou 3 (Bandai Namco) - 248,194
46. [NDS] Fire Emblem: Shin Monshou no Nazo: Hero of Light and Shadow - 247,248
47. [PS3] Another Century's Episode R (Bandai Namco) - 245,301
48. [PSP] AKB1/48: If you love an idol (Bandai Namco) - 235,944
49. [PSP] Keion! Afterschool Live (Sega) - 231,976
50. [NDS] Super Kaseki Horida (Nintendo) - 223,141

51. [NDS] Kingdom Hearts re:coded (Square Enix) - 221,399
52. [NDS] Mario vs. Donkey Kong: Miniland Mayhem (Nintendo) - 213,191
53. [PS3] Jikkyo Powerful Pro Baseball 2010 (Konami) - 212,871
54. [WII] Taiko Drum Master Wii: Dodon to 2daime (Bandai Namco) - 209,201 / 418,284
55. [PSP] Pro Baseball Spirits 2010 (Konami) - 206,786
56. [PS3] Final Fantasy XIII (Square Enix) - 206,057 / 1,904,313
57. [PS3] World Soccer Winning Eleven 2010: Samurai Blue Challenge (Konami) - 203,160
58. [NDS] Inazuma Eleven 2 Fire/Blizzard (Level 5) - 201,773 / 1,145,388
59. [PS3] Call of Duty Black Ops subtitled edition (Square Enix) - 198,374
60. [NDS] Love Plus+ (Konami) - 188,541

61. [PS3] End of Eternity (Sega) - 184,662
62. [PSP] Tales of Phantasia: Narikiri Dungeon X (Bandai Namco) - 180,650
63. [PSP] Kenka Bancho 4 ~One Year War~ (Spike) - 179,354
64. [PS3] Gekijouban Macross F ~Itsuwari no Utahime~ Hybrid Pack (Bandai Namco) - 178,125
65. [PS3] Lost Planet 2 (Capcom) - 174,865
66. [NDS] Dragon Quest IX: Sentinels of the Starry Skies Ultimate Hits (Square Enix) - 171,940
67. [PS3] Pro Baseball Spirits 2010 (Konami) - 170,033
68. [NDS] Harvest Moon: Twin Villages (Marvelous Entertainment) - 169,171
69. [PSP] Gundam Assault Survive (Bandai Namco) - 166,683
70. [PSP] Jikkyou Powerful Pro Baseball 2010 (Konami) - 163,620

71. [NDS] Super Robot Wars L (Bandai Namco) - 161,387
72. [PS3] Star Ocean 4: The Last Hope International (Square Enix) - 158,067
73. [PS3] Super Street Fighter IV (Capcom) - 153,924
74. [PSP] Valkyria Chronicles 2 (Sega) - 153,487
75. [WII] Super Smash Bros. Brawl (Nintendo) - 151,816 / 2,032,654
76. [WII] Momotaro Dentetsu 2010 (Hudson) - 148,988 / 274,482
77. [PSP] Phantasy Star Portable 2nd (Sega) - 147,311 / 590,527
78. [NDS] Mario Kart DS (Nintendo) - 145,761 / 3,709,271
79. [PSP] The 3rd Birthday (Square Enix) - 145,263
80. [WII] Resident Evil: The Darkside Chronicles (Capcom) - 145,149

81. [PSP] Lord of Arcana (Square Enix) - 142,388
82. [WII] Xenoblade (Nintendo) - 141,059
83. [NDS] Tokimeki Memorial Girls Side 3rd Story (Konami) - 140,063
84. [NDS] Etrian Odyssey III (Atlus) - 139,576
85. [PS3] Dead Rising 2 (Capcom) - 138,691
86. [PSP] Ace Combat X2: Joint Assault (Bandai Namco) - 136,806
87. [PS3] NieR Replicant (Square Enix) - 134,015
88. [PSP] World Soccer Winning Eleven 2010: Samurai Blue Challenge (Konami) - 130,291
89. [PSP] Shining Hearts (Sega) - 130,258
90. [NDS] Masked Rider Gun Bride Battle War (Bandai Namco) - 126,928

91. [PS3] Metal Gear Solid 4 Guns of the Patriots PS3 The Best (Konami) - 125,259 / 189,973
92. [PSP] Last Ranker (Capcom) - 123,381
93. [360] Monster Hunter Frontier Online (Capcom) - 123,192
94. [WII] Taiko Drum Master Wii 3daime (Bandai Namco) - 121,668
95. [PS3] Grand Theft Auto Episodes from Liberty City (Take 2 Interactive Japan) - 120,600
96. [PSP] Eiyuu Densetsu: Zero no Kiseki (Nihon Falcolm) - 118,520
97. [PS3] Red Dead Redemption (Rockstar Games) - 114,671
98. [NDS] Medarot DS Kabuto/Kuwagata (Rocket Company) - 114,401
99. [NDS] Okamiden (Capcom) - 113,198
100. [WII] Sengoku BASARA 3 (Capcom) - 111,948

Hardware

NDS - 2,963,709 / 32,124,298
PSP - 2,890,476 / 16,276,931
WII - 1,728,293 / 11,230,292
PS3 - 1,558,480 / 5,949,887
360 - 208,790 / 1,406,663
PS2 - 92,149 / 21,895,911

56. [PS3] Final Fantasy XIII (Square Enix) - 206,057 / 1,904,313

Maybe a slight adjustment upwards for vgchartz numbers can be done?

SONY and Nintendo are neck and neck on the hardware front this year, only an 300,000 unit gap. 

also 

91. [PS3] Metal Gear Solid 4 Guns of the Patriots PS3 The Best (Konami) - 125,259 / 189,973

is that some game of the year edition

Is the greatest hits version

Wait... PSP has outsold the NDS this year or not? Because Famitsu get the DS 73k units ahead.

This is Famitsu info, you are talking about Media Create

Oh man. Why does MS even bother with Japan x), 1 game in top 100... All the way at the bottom.

and its one of Japans biggest franchises; Monster Hunter as well

they might as well quit wasting money in an market they have failed twice at. 

Sems like some games are a bit overtracked:

- Pokemon Black/White

vgchartz: 5,050,908 || famitsu: 4,914,813 -> overtracked by over 100k

- Monster Hunter Portable 3rd

vgchartz: 3,762,348 || famitsu: 3,480,989 -> overtracked by neary 300k!

- Wii Party

vgchartz: 1,682,199 ||   famitsu: 1,539,228 -> overtracked by 150k

Famitsu numbers are projections based on tracking 50% of the market, so are media create's numbers and they usually have different results to each other. VGChartz numbers more often than not seem to track along similar lines to MC so maybe its famitsu tracking thats wrong? who can say...

either way  all three differences you posted are within normal margins for error.