As many stated, we can't say yet that the japanese market is shrinking.
First of all, handheld sales are very high in Japan and if we look at most of the year, Japan would have a much larger percentage of the global market including handhelds.
The reason that the percentage is low even with handhelds is the period of the year as ioi has pointed out very well. At the moment, NA and PAL regions are selling way more than usually, while Japan is selling less than usual.
So much for handhelds and consoles combined. If we go into consoles only, things look a little different indeed. Assuming that the X360 can't pick up steam anymore and the PS3 continues to follow Gamecube's sales pattern, this depends completely on the Wii.
I was surprised as everyone else when I have seen Wii sales in Galaxy's first week. To know why this happened, we have to know who the Wii owners in Japan are.
There are basically two possibilities: First, most of them are casual gamers that started gaming with the DS or even with the Wii; and second, most of them are Nintendo loyalists and lapsed gamers that just bought the Wii much quicker than they bought the Cube.
the latter would explain a couple of things, for example, why the Wii sold stellar numbers until it reached Gamecubes lifetime sales and started struggling since, and second, why a Game like Galaxy couldn't push the hardware. If this would be true, it would mean that there's still a huge potential in console sales for casuals and Wii Fit should start a new boost.
Although these are interesting things, I don't believe that it is true and I go with the first theory that most people are casuals. That would mean that Nintendo fanboys are still hesitating with the Wii, maybe because they want more good software (in this case, Mario Kart and Smash Brothers could boost sales) or because they don't want to buy it now but at Christmas, what would mean that Galaxy as well as the hardware would see a boost in december.
To know which of those two theories is closer to reality, we have to wait for Wii Fit, Christmas and Mario Kart/Smash Brothers.
However, there's another group of gamers that is probably underrepresented in the Wii userbase, the PS2 gamers, i.e. the fanboys of huge-selling games in Japan, for example the FF/DQ crowd or the fighting-game fans etc. This group is mostly on the DS at the moment, but they are also waiting to see if the Wii or the PS3 turns out to be the homebase of their franchises in this gen. That means, if high-budget third party titles start hitting the Wii, hardware sales should start rising. A first indicator that this is true is this week with respectable sales for RE:UC although this is a second-tier game in my opinion.