Lots of the games I like didn't make it in the top 100 either, but it doesn't bother me because I don't need the validation from a general list to feel good about the games I like. Just like I don't need the games I like to tear up the sales charts in order to feel good about liking them.
Sure, I could be sitting here and mourn the fact that Super Smash Bros. games made it into the top 1000 and at times rank higher than games that were on my list, but I accept that not everyone has good taste likes the same games as I do.
Maybe, but you still have loads of games that you do like and also made top 100 - that's why I'm not too bothered, either. But for people who aren't into Nintendo can't really say that, and as a result it's annoying for them to come into a thread like this and see Nintendo everywhere.