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RolStoppable said:
The Fusion Suit is still unlockable? I don't really remember because it isn't something I cared about. Original Metroid definitely isn't unlockable in the Trilogy anymore.

Some other changes:

+Graphics for Metroid Prime have minor additional effects
+Loading times have been notably improved for Metroid Prime 1 and 2
+An easy difficulty setting has been added to Metroid Prime 1 and 2
+Scanned log entries carry over to a new game on the same save file for all games
-Unlocking all bonus material of Metroid Prime 3 still requires the exchange of friend credits

A good chunk of the unlockables needed friend vouchers in Prime 3, and now there's no way to exchange them.  

I think you can still unlock them but you need to import a save file with the credits already on the file.

You can download such a save file here. - http://www.gamefaqs.com/wii/960329-metroid-prime-trilogy/saves