I enjoyed the Triforce quest in Wind Waker HD. Can't remember if I used a guide on it or not, but I don't think so (I know I used a guide for another part of the game though). Not sure why everyone complains about it, it was easy and fun to discover new secrets. The original version was a lot longer, so I can't comment on that. My least favorite Zelda is probably Ocarina of Time. Not a bad game by any means (I'd give it an 8.5 or 9 out of 10), but the best 3D Zelda game? Give me a break.
From better to worse:
The Legend of Zelda: A Link between Worlds
The Legend of Zelda: Twilight Princess (my first Zelda game)
The Legend of Zelda: the Wind Waker HD
The Legend of Zelda: Ocarina of Time 3D
The Legend of Zelda: Skyward Sword
Haven't played Majora's Mask, but I'll buy the 3DS version next year.
edit: wait, my least favorite 3D Zelda game is Skyward Sword, I never even finished that game.
